ID   LOGL3_ORYSJ             Reviewed;         211 AA.
AC   Q8H7U8; A0A0P0VS49; Q10SW3;
DT   15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2003, sequence version 1.
DT   03-AUG-2022, entry version 103.
DE   RecName: Full=Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3;
DE            EC=3.2.2.n1;
DE   AltName: Full=Protein LONELY GUY-like 3;
GN   Name=LOGL3; OrderedLocusNames=Os03g0109300, LOC_Os03g01880;
GN   ORFNames=OsJ_09119, OSJNBb0043C10.13;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   IDENTIFICATION, AND TISSUE SPECIFICITY.
RX   PubMed=17287810; DOI=10.1038/nature05504;
RA   Kurakawa T., Ueda N., Maekawa M., Kobayashi K., Kojima M., Nagato Y.,
RA   Sakakibara H., Kyozuka J.;
RT   "Direct control of shoot meristem activity by a cytokinin-activating
RT   enzyme.";
RL   Nature 445:652-655(2007).
RN   [8]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=19837870; DOI=10.1105/tpc.109.068676;
RA   Kuroha T., Tokunaga H., Kojima M., Ueda N., Ishida T., Nagawa S.,
RA   Fukuda H., Sugimoto K., Sakakibara H.;
RT   "Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the
RT   importance of the direct activation pathway in Arabidopsis.";
RL   Plant Cell 21:3152-3169(2009).
CC   -!- FUNCTION: Cytokinin-activating enzyme working in the direct activation
CC       pathway. Phosphoribohydrolase that converts inactive cytokinin
CC       nucleotides to the biologically active free-base forms (By similarity).
CC       {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=H2O + N(6)-(dimethylallyl)adenosine 5'-phosphate = D-ribose 5-
CC         phosphate + N(6)-dimethylallyladenine; Xref=Rhea:RHEA:48560,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:17660, ChEBI:CHEBI:57526,
CC         ChEBI:CHEBI:78346; EC=3.2.2.n1;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=9-ribosyl-trans-zeatin 5'-phosphate + H2O = D-ribose 5-
CC         phosphate + trans-zeatin; Xref=Rhea:RHEA:48564, ChEBI:CHEBI:15377,
CC         ChEBI:CHEBI:16522, ChEBI:CHEBI:78346, ChEBI:CHEBI:87947; EC=3.2.2.n1;
CC   -!- TISSUE SPECIFICITY: Expressed in roots, leaves, stems, tiller buds,
CC       shoot apex, immature inflorescences and flowers.
CC       {ECO:0000269|PubMed:17287810}.
CC   -!- SIMILARITY: Belongs to the LOG family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=ABF93573.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AC105733; AAN61486.1; -; Genomic_DNA.
DR   EMBL; DP000009; ABF93572.1; -; Genomic_DNA.
DR   EMBL; DP000009; ABF93573.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008209; BAF10620.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS81902.1; -; Genomic_DNA.
DR   EMBL; CM000140; EAZ25308.1; -; Genomic_DNA.
DR   EMBL; AK099538; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015628428.1; XM_015772942.1.
DR   AlphaFoldDB; Q8H7U8; -.
DR   SMR; Q8H7U8; -.
DR   STRING; 4530.OS03T0109300-01; -.
DR   PaxDb; Q8H7U8; -.
DR   PRIDE; Q8H7U8; -.
DR   EnsemblPlants; Os03t0109300-01; Os03t0109300-01; Os03g0109300.
DR   GeneID; 4331344; -.
DR   Gramene; Os03t0109300-01; Os03t0109300-01; Os03g0109300.
DR   KEGG; osa:4331344; -.
DR   eggNOG; ENOG502QSR9; Eukaryota.
DR   HOGENOM; CLU_058336_2_0_1; -.
DR   InParanoid; Q8H7U8; -.
DR   OMA; RTCVFCG; -.
DR   OrthoDB; 979502at2759; -.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000007752; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 3.
DR   Genevisible; Q8H7U8; OS.
DR   GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0016799; F:hydrolase activity, hydrolyzing N-glycosyl compounds; IBA:GO_Central.
DR   GO; GO:0102682; F:N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity; IEA:RHEA.
DR   GO; GO:0009691; P:cytokinin biosynthetic process; IBA:GO_Central.
DR   InterPro; IPR005269; LOG.
DR   InterPro; IPR031100; LOG_fam.
DR   Pfam; PF03641; Lysine_decarbox; 1.
DR   TIGRFAMs; TIGR00730; TIGR00730; 1.
PE   2: Evidence at transcript level;
KW   Cytokinin biosynthesis; Hydrolase; Reference proteome.
FT   CHAIN           1..211
FT                   /note="Probable cytokinin riboside 5'-monophosphate
FT                   phosphoribohydrolase LOGL3"
FT                   /id="PRO_0000395055"
FT   BINDING         84
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   BINDING         102..103
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   BINDING         119..125
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   BINDING         131
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   CONFLICT        68
FT                   /note="G -> V (in Ref. 6; AK099538)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   211 AA;  23222 MW;  B7F162B0D0A6E41B CRC64;
     MRQQQQQQQE SRFKRTCVFC GSSQGNKTTY RDAAVDLAKE LVARGIDLVY GGGSIGLMGL
     VSQAVYDGGR HVIGVIPKTL MTPEIIGETV GEVRPVSDMH QRKAEMARQS DAFIALPGGY
     GTLEELLEVI TWAQLGIHHK PVGLLNVDGY YNSLLTFIDQ AVEEGFISPS ARRIIVSAPT
     AQELMDKLEE YVPYHDRVAS GLNWETGHLG F