ID   LOGL5_ORYSJ             Reviewed;         246 AA.
AC   Q84M85; A0A0P0W5R7; A3BII6;
DT   15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2003, sequence version 1.
DT   03-AUG-2022, entry version 99.
DE   RecName: Full=Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5;
DE            EC=3.2.2.n1;
DE   AltName: Full=Protein LONELY GUY-like 5;
GN   Name=LOGL5; OrderedLocusNames=Os03g0857900, LOC_Os03g64070;
GN   ORFNames=OsJ_23804, OSJNBa0059G06.12;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   IDENTIFICATION, AND TISSUE SPECIFICITY.
RX   PubMed=17287810; DOI=10.1038/nature05504;
RA   Kurakawa T., Ueda N., Maekawa M., Kobayashi K., Kojima M., Nagato Y.,
RA   Sakakibara H., Kyozuka J.;
RT   "Direct control of shoot meristem activity by a cytokinin-activating
RT   enzyme.";
RL   Nature 445:652-655(2007).
RN   [8]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=19837870; DOI=10.1105/tpc.109.068676;
RA   Kuroha T., Tokunaga H., Kojima M., Ueda N., Ishida T., Nagawa S.,
RA   Fukuda H., Sugimoto K., Sakakibara H.;
RT   "Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the
RT   importance of the direct activation pathway in Arabidopsis.";
RL   Plant Cell 21:3152-3169(2009).
CC   -!- FUNCTION: Cytokinin-activating enzyme working in the direct activation
CC       pathway. Phosphoribohydrolase that converts inactive cytokinin
CC       nucleotides to the biologically active free-base forms (By similarity).
CC       {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=H2O + N(6)-(dimethylallyl)adenosine 5'-phosphate = D-ribose 5-
CC         phosphate + N(6)-dimethylallyladenine; Xref=Rhea:RHEA:48560,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:17660, ChEBI:CHEBI:57526,
CC         ChEBI:CHEBI:78346; EC=3.2.2.n1;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=9-ribosyl-trans-zeatin 5'-phosphate + H2O = D-ribose 5-
CC         phosphate + trans-zeatin; Xref=Rhea:RHEA:48564, ChEBI:CHEBI:15377,
CC         ChEBI:CHEBI:16522, ChEBI:CHEBI:78346, ChEBI:CHEBI:87947; EC=3.2.2.n1;
CC   -!- TISSUE SPECIFICITY: Expressed in roots and leaves.
CC       {ECO:0000269|PubMed:17287810}.
CC   -!- SIMILARITY: Belongs to the LOG family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=EAZ39375.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AC096690; AAP21384.1; -; Genomic_DNA.
DR   EMBL; DP000009; ABF99999.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF13872.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS87462.1; -; Genomic_DNA.
DR   EMBL; CM000144; EAZ39375.1; ALT_INIT; Genomic_DNA.
DR   EMBL; AK061341; BAG87867.1; -; mRNA.
DR   EMBL; AK071705; BAG92639.1; -; mRNA.
DR   EMBL; AK104022; BAG96377.1; -; mRNA.
DR   RefSeq; XP_015628468.1; XM_015772982.1.
DR   AlphaFoldDB; Q84M85; -.
DR   SMR; Q84M85; -.
DR   STRING; 4530.OS03T0857900-02; -.
DR   PaxDb; Q84M85; -.
DR   PRIDE; Q84M85; -.
DR   EnsemblPlants; Os03t0857900-02; Os03t0857900-02; Os03g0857900.
DR   EnsemblPlants; Os03t0857900-04; Os03t0857900-04; Os03g0857900.
DR   GeneID; 4334848; -.
DR   Gramene; Os03t0857900-02; Os03t0857900-02; Os03g0857900.
DR   Gramene; Os03t0857900-04; Os03t0857900-04; Os03g0857900.
DR   KEGG; osa:4334848; -.
DR   eggNOG; ENOG502QSR9; Eukaryota.
DR   HOGENOM; CLU_058336_2_0_1; -.
DR   InParanoid; Q84M85; -.
DR   OMA; FEIATWR; -.
DR   OrthoDB; 979502at2759; -.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000007752; Chromosome 7.
DR   Proteomes; UP000059680; Chromosome 3.
DR   Genevisible; Q84M85; OS.
DR   GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0016799; F:hydrolase activity, hydrolyzing N-glycosyl compounds; IBA:GO_Central.
DR   GO; GO:0102682; F:N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity; IEA:RHEA.
DR   GO; GO:0009691; P:cytokinin biosynthetic process; IBA:GO_Central.
DR   InterPro; IPR005269; LOG.
DR   InterPro; IPR031100; LOG_fam.
DR   Pfam; PF03641; Lysine_decarbox; 1.
DR   TIGRFAMs; TIGR00730; TIGR00730; 1.
PE   2: Evidence at transcript level;
KW   Cytokinin biosynthesis; Hydrolase; Reference proteome.
FT   CHAIN           1..246
FT                   /note="Probable cytokinin riboside 5'-monophosphate
FT                   phosphoribohydrolase LOGL5"
FT                   /id="PRO_0000395057"
FT   REGION          1..28
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..17
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         103
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   BINDING         121..122
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   BINDING         138..144
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
FT   BINDING         150
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250|UniProtKB:B2HS63"
SQ   SEQUENCE   246 AA;  26585 MW;  02F8CFF6A4589BCC CRC64;
     MMMENSREQQ PESSPANNNS KKKKKKKTAS RFRRVCVFCG SSPGKKASYQ VAAVQLGQQL
     VERGIDLVYG GGSVGLMGLV SRAVHGGGGH VVGVVPNGVL PRELIGETLG EVRAVGSMHQ
     RKAEMARESD AFIALPGGYG TLEELLEVIT WAQLRIHHKP VGLLNVDGYY DSLLAFIDKA
     VHEGFVSPPA RRIIVAAPTA SDLLCKLEEY VPPPHDATAL KLTWEMSTVS EQHAGSIYSP
     KPDMAR