LOL5_ORYSJ
ID LOL5_ORYSJ Reviewed; 163 AA.
AC Q704V3; Q0JLA6; Q5ZBI2;
DT 31-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 07-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 61.
DE RecName: Full=Protein LOL5;
DE AltName: Full=OsLOL2;
DE AltName: Full=Protein LSD ONE LIKE 5;
DE Short=OsLOL5;
DE AltName: Full=Putative zinc finger LOL5;
GN Name=LOL5; Synonyms=LOL2; OrderedLocusNames=Os01g0612700, LOC_Os01g42710;
GN ORFNames=P0046B10.32, P0410E01.13;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC TISSUE=Leaf;
RA Huang J., Huang F., Zhang H.S.;
RT "A LSD1-like zinc finger protein cDNA from rice.";
RL Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=17404758; DOI=10.1007/s00438-007-0232-2;
RA Xu C., He C.;
RT "The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth
RT and disease resistance.";
RL Mol. Genet. Genomics 278:85-94(2007).
CC -!- FUNCTION: Involved in plant growth and disease resistance.
CC {ECO:0000269|PubMed:17404758}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:17404758}.
CC -!- MISCELLANEOUS: Plants silencing LOL2 display a dwarf phenotype,
CC decreased content of gibberellin GA1, reduced expression of KS1
CC involved in gibberellin biosynthesis and reduced resistance to
CC bacterial blight. Plants overexpressing LOL2 show constitutive
CC expression of PR1 and enhanced resistance to bacterial blight.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD61218.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD61508.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF05472.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AJ620677; CAF05903.1; -; mRNA.
DR EMBL; AP002866; BAD61218.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003314; BAD61508.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF05472.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; Q704V3; -.
DR STRING; 4530.OS01T0612700-01; -.
DR PaxDb; Q704V3; -.
DR PRIDE; Q704V3; -.
DR EnsemblPlants; Os01t0612700-02; Os01t0612700-02; Os01g0612700.
DR Gramene; Os01t0612700-02; Os01t0612700-02; Os01g0612700.
DR eggNOG; ENOG502S2GF; Eukaryota.
DR HOGENOM; CLU_004625_0_0_1; -.
DR InParanoid; Q704V3; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q704V3; baseline and differential.
DR Genevisible; Q704V3; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0031349; P:positive regulation of defense response; IMP:UniProtKB.
DR GO; GO:0045927; P:positive regulation of growth; IMP:UniProtKB.
DR InterPro; IPR040319; LSD1-like.
DR InterPro; IPR005735; Znf_LSD1.
DR PANTHER; PTHR31747; PTHR31747; 1.
DR Pfam; PF06943; zf-LSD1; 2.
DR TIGRFAMs; TIGR01053; LSD1; 2.
PE 2: Evidence at transcript level;
KW Nucleus; Plant defense; Reference proteome.
FT CHAIN 1..163
FT /note="Protein LOL5"
FT /id="PRO_0000408491"
FT REGION 1..51
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 70..100
FT /note="Putative zinc finger 1"
FT REGION 108..138
FT /note="Putative zinc finger 2"
FT COMPBIAS 1..48
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 163 AA; 17575 MW; E5C4569B296D39B3 CRC64;
MSQLPLASQA TTTDLVSTTA MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP
SPYLNKEVGQ MVCGSCRILL AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY
PFGAPAVKCS LCLFVTEIGE RNVRRRLSIE QPTRTNSSGL AEA
