LPTD_ALIF1
ID LPTD_ALIF1 Reviewed; 786 AA.
AC Q5E862;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 15-MAR-2005, sequence version 1.
DT 25-MAY-2022, entry version 88.
DE RecName: Full=LPS-assembly protein LptD {ECO:0000255|HAMAP-Rule:MF_01411};
DE Flags: Precursor;
GN Name=lptD {ECO:0000255|HAMAP-Rule:MF_01411}; Synonyms=imp, ostA;
GN OrderedLocusNames=VF_0289;
OS Aliivibrio fischeri (strain ATCC 700601 / ES114) (Vibrio fischeri).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Aliivibrio.
OX NCBI_TaxID=312309;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700601 / ES114;
RX PubMed=15703294; DOI=10.1073/pnas.0409900102;
RA Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R.,
RA Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E.,
RA Stevens A., Visick K., Whistler C., Greenberg E.P.;
RT "Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with
RT pathogenic congeners.";
RL Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005).
CC -!- FUNCTION: Together with LptE, is involved in the assembly of
CC lipopolysaccharide (LPS) at the surface of the outer membrane.
CC {ECO:0000255|HAMAP-Rule:MF_01411}.
CC -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC complex. Interacts with LptE and LptA. {ECO:0000255|HAMAP-
CC Rule:MF_01411}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP-
CC Rule:MF_01411}.
CC -!- SIMILARITY: Belongs to the LptD family. {ECO:0000255|HAMAP-
CC Rule:MF_01411}.
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DR EMBL; CP000020; AAW84784.1; -; Genomic_DNA.
DR RefSeq; WP_011261100.1; NC_006840.2.
DR RefSeq; YP_203672.1; NC_006840.2.
DR AlphaFoldDB; Q5E862; -.
DR SMR; Q5E862; -.
DR STRING; 312309.VF_0289; -.
DR PRIDE; Q5E862; -.
DR EnsemblBacteria; AAW84784; AAW84784; VF_0289.
DR KEGG; vfi:VF_0289; -.
DR PATRIC; fig|312309.11.peg.283; -.
DR eggNOG; COG1452; Bacteria.
DR HOGENOM; CLU_009039_0_0_6; -.
DR OMA; DYSHLDW; -.
DR OrthoDB; 100018at2; -.
DR Proteomes; UP000000537; Chromosome I.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR InterPro; IPR020889; LipoPS_assembly_LptD.
DR InterPro; IPR007543; LptD_C.
DR InterPro; IPR005653; OstA-like_N.
DR Pfam; PF04453; LptD; 1.
DR Pfam; PF03968; LptD_N; 1.
PE 3: Inferred from homology;
KW Cell outer membrane; Membrane; Reference proteome; Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01411"
FT CHAIN 25..786
FT /note="LPS-assembly protein LptD"
FT /id="PRO_0000020292"
SQ SEQUENCE 786 AA; 89296 MW; D9DE906B5A9207C2 CRC64;
MSFTSRSLLA SFTGCLLYGT PAIADNGSEP VSPENGIVFP LQTDAVNSCE VPDKKSKEEE
DQQPVLIQAD SVEASNNSKA VYKGNVHIIK GRQEIKADSI TLHQQENIAI AEGNVDYSSM
EMRTTSDKVT TNLSTEDTTM VNTAYKMSCQ PIRGQAGRVL KTGQEIYQLE DASFTTCPAD
DNSWRFKASD IELDQSDEWA TFYNARFEVL DVPIFYLPYV TVPVGDTRKT GVLIPSIGLD
SKNGFELSVP IYWNIAPNYD ATTTINYMER RGTQLETEFR YLTELGKGTV DAEYLNEDDK
FKDKGSRWGV SWDHSGIYQQ HWKFDVEYSK VSDIDYFQDL NSSIGTRDEG QLQQSGEVSY
RSQDWDMTMR VRDFQVLVEE QTPYRLMPQI EFNYYAPQFY SEFDFNLHSH ISKFTTDDKA
KPSATRVHLE PKLSLPLSGT WWSLIPETSL LYTYYQQDFD KQPVGPNGSL NLDHEVSRTI
PEVRINGAIY LDSTHKFLGE YLQTLEPKIQ YLYVPEVDQS NIYGGTGDGG YDSSKLQLDY
YGLFRDRQYS GVDYIADANQ FSVGATSRFY DDAYKERMNI SFGQILYLNG SGTEQNNDDK
NSSAWAMESD FNYDDYLFYH GGIQYDSNVS ELQVANSTLE YRFSKGYIQA NYRYVSKNYI
ESNVNFEDDL SLITQHGIYQ AGLLSEYNLG RNWALKGQYF HDTKEDQMIE ALVGVTYLSD
CWSFGLTYSD QLIAPESAKT IGTYEPEYES NLMLSIAIRG LGNNTGITSG SANNALDYGR
PFYLNN
