ID   LPTD_NITOC              Reviewed;         738 AA.
AC   Q3JAF0;
DT   20-MAR-2007, integrated into UniProtKB/Swiss-Prot.
DT   08-NOV-2005, sequence version 1.
DT   25-MAY-2022, entry version 81.
DE   RecName: Full=LPS-assembly protein LptD {ECO:0000255|HAMAP-Rule:MF_01411};
DE   Flags: Precursor;
GN   Name=lptD {ECO:0000255|HAMAP-Rule:MF_01411}; Synonyms=imp, ostA;
GN   OrderedLocusNames=Noc_1724;
OS   Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB
OS   11848 / C-107).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC   Nitrosococcus.
OX   NCBI_TaxID=323261;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107;
RX   PubMed=16957257; DOI=10.1128/aem.00463-06;
RA   Klotz M.G., Arp D.J., Chain P.S.G., El-Sheikh A.F., Hauser L.J.,
RA   Hommes N.G., Larimer F.W., Malfatti S.A., Norton J.M., Poret-Peterson A.T.,
RA   Vergez L.M., Ward B.B.;
RT   "Complete genome sequence of the marine, chemolithoautotrophic, ammonia-
RT   oxidizing bacterium Nitrosococcus oceani ATCC 19707.";
RL   Appl. Environ. Microbiol. 72:6299-6315(2006).
CC   -!- FUNCTION: Together with LptE, is involved in the assembly of
CC       lipopolysaccharide (LPS) at the surface of the outer membrane.
CC       {ECO:0000255|HAMAP-Rule:MF_01411}.
CC   -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC       complex. Interacts with LptE and LptA. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SIMILARITY: Belongs to the LptD family. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
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DR   EMBL; CP000127; ABA58196.1; -; Genomic_DNA.
DR   RefSeq; WP_002810606.1; NC_007484.1.
DR   AlphaFoldDB; Q3JAF0; -.
DR   SMR; Q3JAF0; -.
DR   STRING; 323261.Noc_1724; -.
DR   EnsemblBacteria; ABA58196; ABA58196; Noc_1724.
DR   KEGG; noc:Noc_1724; -.
DR   eggNOG; COG1452; Bacteria.
DR   HOGENOM; CLU_009039_0_0_6; -.
DR   OMA; DYSHLDW; -.
DR   OrthoDB; 100018at2; -.
DR   Proteomes; UP000006838; Chromosome.
DR   GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR   GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR   GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR   HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR   InterPro; IPR020889; LipoPS_assembly_LptD.
DR   InterPro; IPR045659; LptD_2.
DR   InterPro; IPR007543; LptD_C.
DR   InterPro; IPR005653; OstA-like_N.
DR   Pfam; PF04453; LptD; 1.
DR   Pfam; PF19838; LptD_2; 1.
DR   Pfam; PF03968; LptD_N; 1.
PE   3: Inferred from homology;
KW   Cell outer membrane; Membrane; Reference proteome; Signal.
FT   SIGNAL          1..26
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01411"
FT   CHAIN           27..738
FT                   /note="LPS-assembly protein LptD"
FT                   /id="PRO_5000104759"
SQ   SEQUENCE   738 AA;  83275 MW;  996169F2BC703E0C CRC64;
     MEHKRNNILL AGLFFLLLGL VSIARAQIPQ WEKCGAFVEP ASEELLDPEP RGPVNVEADR
     VESEKNGVSV FSGEVKFRRR GQWLDADEVL YDKPNDTVEA FGDVRYQDAT MDVISDSAKV
     NLEADIGEAE NARYFLRDYH ARGEAGAVER EGSVKTELRD ATFTTCDIGD NAWQLKADRV
     SLDHKEGVGW ARGARLRLWD TTVFYVPFLR FPIDNRRKSG FLVPSGGSSS NSGIGISTPY
     YWNIAPNMDA TITPRYLSDR GPMMEGEVRY LNPSNFGRIR GSFLPHDAKR DDYRGAFSYR
     HSGSPRPRWF TNLDLNLVSD DRYFEDFGNS LSIASTTVLN NSLDIGYQGN GWNALGRFQG
     FQTIDRSIPA FARPYQRLPQ FLVDGFFPDR FLGLDVDFHG EVVRFDRDAA PPTGGVRLDF
     WPTVSLPFRT PGTFFTPSIG VRDTRYFLED APPGTDSTLS RTLPIVSMDT GAIFERSLTL
     WGSDLRQTLE PRAYYLYVPF EDQSAFPVFD SAPLDFYFSR LFQPNRFTGA DRLNDANQLT
     LAVTTRLLQS DTGAELLRAS IGQIQFFRDR RVTMPGAAKE TDSSSLVIAE VAARLAREWS
     LRGELRFDPH KKQTDLGAAE LHYRGDEGGL LNINYRFRRN FLEQLNVSGR YPIADNWSVV
     GRWYQSIADG RLLELLGGVE YDSCCWAIRL VGRSYITNIE GDRNNSVLVQ LELKGLGNLG
     QNVERLLERS VLGYGQPF