ID   LPTD_PSEA6              Reviewed;         759 AA.
AC   Q15QB4;
DT   20-MAR-2007, integrated into UniProtKB/Swiss-Prot.
DT   20-MAR-2007, sequence version 2.
DT   25-MAY-2022, entry version 94.
DE   RecName: Full=LPS-assembly protein LptD {ECO:0000255|HAMAP-Rule:MF_01411};
DE   Flags: Precursor;
GN   Name=lptD {ECO:0000255|HAMAP-Rule:MF_01411}; Synonyms=imp, ostA;
GN   OrderedLocusNames=Patl_3418;
OS   Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=342610;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=T6c / ATCC BAA-1087;
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA   Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C.,
RA   Bartlett D., Higgins B.P., Richardson P.;
RT   "Complete sequence of Pseudoalteromonas atlantica T6c.";
RL   Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Together with LptE, is involved in the assembly of
CC       lipopolysaccharide (LPS) at the surface of the outer membrane.
CC       {ECO:0000255|HAMAP-Rule:MF_01411}.
CC   -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC       complex. Interacts with LptE and LptA. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SIMILARITY: Belongs to the LptD family. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=ABG41924.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; CP000388; ABG41924.1; ALT_INIT; Genomic_DNA.
DR   AlphaFoldDB; Q15QB4; -.
DR   SMR; Q15QB4; -.
DR   STRING; 342610.Patl_3418; -.
DR   PRIDE; Q15QB4; -.
DR   EnsemblBacteria; ABG41924; ABG41924; Patl_3418.
DR   KEGG; pat:Patl_3418; -.
DR   eggNOG; COG1452; Bacteria.
DR   HOGENOM; CLU_009039_0_0_6; -.
DR   Proteomes; UP000001981; Chromosome.
DR   GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR   GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR   GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR   HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR   InterPro; IPR020889; LipoPS_assembly_LptD.
DR   InterPro; IPR007543; LptD_C.
DR   InterPro; IPR005653; OstA-like_N.
DR   Pfam; PF04453; LptD; 1.
DR   Pfam; PF03968; LptD_N; 1.
PE   3: Inferred from homology;
KW   Cell outer membrane; Membrane; Reference proteome; Signal.
FT   SIGNAL          1..45
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01411"
FT   CHAIN           46..759
FT                   /note="LPS-assembly protein LptD"
FT                   /id="PRO_5000125743"
SQ   SEQUENCE   759 AA;  86673 MW;  0290476E12D39708 CRC64;
     MKPLKLELNP RDFNHYQAAF LPYRMKIKQP LHVLCFSVCS LSAVAQETCP APANTFVVEK
     RLPNGQIQVI SNMTSIQQDN FAEFEGDVEI TNKDSQIIAN KAQIDRTTQQ LIATGDVSYQ
     NPQLSVTSQK VLLNTQNNRM EIADTQYELT TLNARGQAEL LVVDQTQGLE LNGVTFSTCP
     TGQEDWLVHA DSITVKPDET RGVARNAFFY VQDIPIFYLP YYSFPVTDAR ETGLLFPQVG
     SSSSTGFAYE QPYYLNLDPQ YDATITPRYM TKRGLQLKTE FRYLTENNSG QIDIEYLPND
     SDSTTNEDRY FYRFTHKGAL SDDWEVNVDF NGLSDDNYIV DLGSDYYNSA DTHLFRTLGL
     HYYSDALNVS LQLRDFEILG DHDDTYRALP ELKLDYVTDL PAGFKFDIHS ELARFDNANG
     TSPKATRAHI APTLSLPLEN SWGEFLAETS IMHTVYRQED IEGTDLSRDV SRTLGQAKLY
     GALVFERQAH WFGDNVTQTL EPRAQYLYTS YEDQSDIGLY DTTRLFNDFA GLFRGQEFTG
     LDRISDKNQV TLGVTSRIID EDNREQFKLS LGQIFYLEDN KVTAASKEDD RSALAAELDW
     RIGSKWLAHS EVQVSTQTDK VERSSVGLEY RLARDKMLQI NHRFVRDLSG EQISQLGLTA
     SWPIAQDWYW VGRWYRDIDR HRTIESYTGL QYESCCWALR IVAQRQLTSR FDDDGLQSTD
     EFDSGIAIQF LFKGIGGDSS GRDMLRDGLF GYRQPYLLD