ID   LPTD_PSEMY              Reviewed;         938 AA.
AC   A4XZJ1;
DT   14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT   29-MAY-2007, sequence version 1.
DT   25-MAY-2022, entry version 74.
DE   RecName: Full=LPS-assembly protein LptD {ECO:0000255|HAMAP-Rule:MF_01411};
DE   Flags: Precursor;
GN   Name=lptD {ECO:0000255|HAMAP-Rule:MF_01411}; Synonyms=imp, ostA;
GN   OrderedLocusNames=Pmen_4010;
OS   Pseudomonas mendocina (strain ymp).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
OX   NCBI_TaxID=399739;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ymp;
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA   Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C.,
RA   Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.,
RA   Hersman L., Dubois J., Maurice P., Richardson P.;
RT   "Complete sequence of Pseudomonas mendocina ymp.";
RL   Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Together with LptE, is involved in the assembly of
CC       lipopolysaccharide (LPS) at the surface of the outer membrane.
CC       {ECO:0000255|HAMAP-Rule:MF_01411}.
CC   -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC       complex. Interacts with LptE and LptA. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SIMILARITY: Belongs to the LptD family. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
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DR   EMBL; CP000680; ABP86757.1; -; Genomic_DNA.
DR   RefSeq; WP_012019861.1; NC_009439.1.
DR   AlphaFoldDB; A4XZJ1; -.
DR   SMR; A4XZJ1; -.
DR   STRING; 399739.Pmen_4010; -.
DR   EnsemblBacteria; ABP86757; ABP86757; Pmen_4010.
DR   KEGG; pmy:Pmen_4010; -.
DR   PATRIC; fig|399739.8.peg.4062; -.
DR   eggNOG; COG1452; Bacteria.
DR   HOGENOM; CLU_009039_1_0_6; -.
DR   OMA; DYSHLDW; -.
DR   OrthoDB; 100018at2; -.
DR   GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR   GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR   GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR   HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR   InterPro; IPR020889; LipoPS_assembly_LptD.
DR   InterPro; IPR007543; LptD_C.
DR   InterPro; IPR005653; OstA-like_N.
DR   Pfam; PF04453; LptD; 1.
DR   Pfam; PF03968; LptD_N; 1.
PE   3: Inferred from homology;
KW   Cell outer membrane; Membrane; Signal.
FT   SIGNAL          1..33
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01411"
FT   CHAIN           34..938
FT                   /note="LPS-assembly protein LptD"
FT                   /id="PRO_5000240920"
FT   REGION          52..96
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        58..86
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   938 AA;  106652 MW;  C08E0F7201F9BD59 CRC64;
     MAVKHPAFRK KFPLLVTGSL LALQPAFSLQ SFAAEQYDCQ ASPTGGWACA PKTATSALPP
     RPQHSRSAVS TTSGSATATA TKQEPAPVLV TESKGRALAS RSPDYSHLDW VPRDKLTAAQ
     LAEAGPYCAG AYIEPLRPGM DDTTPLDESP MYVSAKASRY EQEKQIATLA GDVVLRQSGM
     QVEADEASLH QAENRGELVG NVRLRDKGTL VVGDRAELQL DNGEARIDNA EYVMHQAHVR
     GSALYAKREE TAIIRLKDGT YTRCEPGDNA WHLKGNNVTL NPATGFGTAT NVTLRVKDIP
     VFYTPYIYFP IDDRRQSGFL PPSLGTSSSN GFSLQTPYYF NLAPNYDATL YPTYMAKRGL
     LMEGEFRYLT ESSEGQVGGA WLNDQEDERK LQSEYEDQRW MYSWQHKQGL NSRLLAEVDY
     TDISDPYYFQ DLDTDLGIET QSYVNQRGTL TYRGDSYTAR LNVHAYELAN ITDITPYDRL
     PQITLDGKLP FNPGGLDFTY GTEYVRFDRN LRSGFFVDKD GVTGRPQDLW YDARLTGLNR
     ADGERLHLEP GVSLPLNWSW GFVKPQVKYL HTQYQVNLDG QGKADLATND PENQWFGVDY
     KGSPNRGVGL FSLDSGLYFD RNTQLFGRET RQTLEPRAFY LYVPEEDQTD IPIFDTGEPT
     FSYASLWREN RFSGKDRIGD ENKLSLGVTS RWIEPNGFER QRFSVGQAFY FEDRKVQLAG
     IDYRGRQDAT SDVSPYALEY LYRFNRDWRF SSTFNWDPDQ HATRSGSAMF HYQPEDNPNK
     IVNLGYRYRN DIVRYDRDSG TWTTNPDYGN PTLADGSPNP NYIKNYYKID QHDFSVIWPL
     APQWSLISRW QYDYGRNRTL EAFGGFEYDS CCWKLRLINR YWIDYDEVSL DPSRNDEPDR
     GIFLQIVLKG LGGVVGNKVE TFLDQGIQGY REREDQAF