ID   LPTD_SHEFN              Reviewed;         766 AA.
AC   Q07YK1;
DT   20-MAR-2007, integrated into UniProtKB/Swiss-Prot.
DT   31-OCT-2006, sequence version 1.
DT   25-MAY-2022, entry version 80.
DE   RecName: Full=LPS-assembly protein LptD {ECO:0000255|HAMAP-Rule:MF_01411};
DE   Flags: Precursor;
GN   Name=lptD {ECO:0000255|HAMAP-Rule:MF_01411}; Synonyms=imp, ostA;
GN   OrderedLocusNames=Sfri_3076;
OS   Shewanella frigidimarina (strain NCIMB 400).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=318167;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NCIMB 400;
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA   Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H.,
RA   Newman D., Tiedje J.M., Zhou J., Romine M.F., Culley D.E., Serres M.,
RA   Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.;
RT   "Complete sequence of Shewanella frigidimarina NCIMB 400.";
RL   Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Together with LptE, is involved in the assembly of
CC       lipopolysaccharide (LPS) at the surface of the outer membrane.
CC       {ECO:0000255|HAMAP-Rule:MF_01411}.
CC   -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC       complex. Interacts with LptE and LptA. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SIMILARITY: Belongs to the LptD family. {ECO:0000255|HAMAP-
CC       Rule:MF_01411}.
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DR   EMBL; CP000447; ABI72913.1; -; Genomic_DNA.
DR   RefSeq; WP_011638519.1; NC_008345.1.
DR   AlphaFoldDB; Q07YK1; -.
DR   SMR; Q07YK1; -.
DR   STRING; 318167.Sfri_3076; -.
DR   EnsemblBacteria; ABI72913; ABI72913; Sfri_3076.
DR   KEGG; sfr:Sfri_3076; -.
DR   eggNOG; COG1452; Bacteria.
DR   HOGENOM; CLU_009039_2_0_6; -.
DR   OMA; DYSHLDW; -.
DR   OrthoDB; 100018at2; -.
DR   Proteomes; UP000000684; Chromosome.
DR   GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR   GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR   GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR   HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR   InterPro; IPR020889; LipoPS_assembly_LptD.
DR   InterPro; IPR007543; LptD_C.
DR   InterPro; IPR005653; OstA-like_N.
DR   Pfam; PF04453; LptD; 1.
DR   Pfam; PF03968; LptD_N; 1.
PE   3: Inferred from homology;
KW   Cell outer membrane; Membrane; Reference proteome; Signal.
FT   SIGNAL          1..18
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01411"
FT   CHAIN           19..766
FT                   /note="LPS-assembly protein LptD"
FT                   /id="PRO_5000130983"
SQ   SEQUENCE   766 AA;  88019 MW;  913473F9852C7068 CRC64;
     MQIRYFLALS LLPNIVLADE PTTTEAPSLQ CVVAPPVSRS FEDREALTGI SDDQIVIISD
     HSSVAYNNQA EFSGDVSFSQ GLRHIAADNA VLDQKEQRLN ADGNLIFKDE LFTVTADTLE
     AQMSTNNATL KGAQYWLHGQ QVHGDAEKLQ ITSDNNLLLT KTNFTTCPPG DESWLLEADM
     IKIDSKEEWG EIWNAKLRIA NIPVLYIPYM TVPVSDKRKT GFLFPSFSTS TTNGVEVSTP
     YYWNIAPEFD LTFTPDFMSS RGLYTKTEFR YLAGEQQNGQ FNVEYLGSDS KLTSNADRYL
     YHWSHQGAVN KNWRVRSDYT DVSDNNYFND LNSDVNQSTD NQLSRIGEAS YFERDWDFNM
     RVQDIKVLGE DEKPYQVMPQ LNFNYRSADI FNTIDFKFNS ELTNFRHQDN EYNTATRLHL
     VPSLIWPIQG PAGSFTSEVK LLQTQYWQQN IDEDSTLNDS ISRTIPQARL HGQVNFERAT
     QLFDEQYRQT LEPQIQYLYV GYEDQSNIGI YDTAQLQEDY YGLFRDRQYS GLDRVADANQ
     FTLGFTTRLF DQTNREKLKF SVGQIMYLED SKVSIDDTYE ETAQSTSVLA AELDAQLYND
     WFVSGSVQHD TETGENKKNE VTLDYRPSSD RLLQLSYRYV PDLLNTNTND QVDISQAGVR
     TSWPISDNLY FVGNYYYDLN ESRNIETYTG VQYESCCWAL RLSYHYRIKT NYDDDLSESI
     DGREEFESGV YLNFVIKGLG GSGPLGVDDM LNEGLFNYRK PLYLRN