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LRX6_ARATH
ID   LRX6_ARATH              Reviewed;         470 AA.
AC   Q9LUI1;
DT   13-JUL-2010, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   03-AUG-2022, entry version 121.
DE   RecName: Full=Leucine-rich repeat extensin-like protein 6;
DE            Short=AtLRX6;
DE            Short=LRR/EXTENSIN6;
DE   AltName: Full=Cell wall hydroxyproline-rich glycoprotein;
DE   Flags: Precursor;
GN   Name=LRX6; OrderedLocusNames=At3g22800; ORFNames=MWI23.17;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA   Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT   features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT   clones.";
RL   DNA Res. 7:131-135(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=12644681; DOI=10.1104/pp.102.014928;
RA   Baumberger N., Doesseger B., Guyot R., Diet A., Parsons R.L., Clark M.A.,
RA   Simmons M.P., Bedinger P., Goff S.A., Ringli C., Keller B.;
RT   "Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis
RT   and rice. A conserved family of cell wall proteins form a vegetative and a
RT   reproductive clade.";
RL   Plant Physiol. 131:1313-1326(2003).
CC   -!- FUNCTION: Modulates cell morphogenesis by regulating cell wall
CC       formation and assembly, and/or growth polarization. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12644681}.
CC   -!- DEVELOPMENTAL STAGE: Observed in emerging secondary roots.
CC       {ECO:0000269|PubMed:12644681}.
CC   -!- PTM: Hydroxylated on proline residues in the S-P-P-P-P repeat.
CC       {ECO:0000250}.
CC   -!- PTM: O-glycosylated on hydroxyprolines. {ECO:0000250}.
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DR   EMBL; AB022223; BAB01255.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE76678.1; -; Genomic_DNA.
DR   EMBL; BT053757; ACL13984.1; -; mRNA.
DR   RefSeq; NP_188919.1; NM_113179.4.
DR   AlphaFoldDB; Q9LUI1; -.
DR   SMR; Q9LUI1; -.
DR   STRING; 3702.AT3G22800.1; -.
DR   PaxDb; Q9LUI1; -.
DR   PRIDE; Q9LUI1; -.
DR   ProteomicsDB; 238577; -.
DR   EnsemblPlants; AT3G22800.1; AT3G22800.1; AT3G22800.
DR   GeneID; 821851; -.
DR   Gramene; AT3G22800.1; AT3G22800.1; AT3G22800.
DR   KEGG; ath:AT3G22800; -.
DR   Araport; AT3G22800; -.
DR   TAIR; locus:2094389; AT3G22800.
DR   eggNOG; ENOG502QTD8; Eukaryota.
DR   HOGENOM; CLU_000288_23_5_1; -.
DR   InParanoid; Q9LUI1; -.
DR   OMA; INPCSAH; -.
DR   OrthoDB; 826997at2759; -.
DR   PhylomeDB; Q9LUI1; -.
DR   PRO; PR:Q9LUI1; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LUI1; baseline and differential.
DR   Genevisible; Q9LUI1; AT.
DR   GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR   GO; GO:0005199; F:structural constituent of cell wall; ISS:TAIR.
DR   GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR   Gene3D; 3.80.10.10; -; 2.
DR   InterPro; IPR001611; Leu-rich_rpt.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   InterPro; IPR013210; LRR_N_plant-typ.
DR   Pfam; PF13855; LRR_8; 1.
DR   Pfam; PF08263; LRRNT_2; 1.
PE   2: Evidence at transcript level;
KW   Cell wall; Cell wall biogenesis/degradation; Glycoprotein; Hydroxylation;
KW   Leucine-rich repeat; Reference proteome; Repeat; Secreted; Signal.
FT   SIGNAL          1..28
FT                   /evidence="ECO:0000255"
FT   CHAIN           29..470
FT                   /note="Leucine-rich repeat extensin-like protein 6"
FT                   /id="PRO_0000395466"
FT   REPEAT          98..122
FT                   /note="LRR 1"
FT   REPEAT          123..146
FT                   /note="LRR 2"
FT   REPEAT          147..170
FT                   /note="LRR 3"
FT   REPEAT          171..194
FT                   /note="LRR 4"
FT   REPEAT          196..217
FT                   /note="LRR 5"
FT   REPEAT          219..241
FT                   /note="LRR 6"
FT   REPEAT          243..265
FT                   /note="LRR 7"
FT   REPEAT          266..290
FT                   /note="LRR 8"
FT   REPEAT          291..314
FT                   /note="LRR 9"
FT   REPEAT          316..337
FT                   /note="LRR 10"
FT   REGION          378..470
FT                   /note="Contains the Ser-Pro(4) repeats"
FT   REGION          378..411
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CARBOHYD        83
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        319
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   470 AA;  52335 MW;  5F3B812A60282D39 CRC64;
     MREDTFFFQW WFLVSGLSFI FLLPQAFTYH TPPINPCFAH PFLPPITNPR LLKAFTALQA
     WKFTITSDPN GFTSNWCGPN VCNYTGVFCA PALDNPYVLT VAGIDLNHAN IAGYLPLELG
     LLTDLALFHI NSNRFQGQLP KTLKCLHLLH ELDVSNNKLS GEFPSVIFSL PSLKFLDIRF
     NEFQGDVPSQ LFDLNLDALF INDNKFQFRL PRNIGNSPVS VLVLANNDLQ GSCVPPSFYK
     MGKTLHEIII TNSQLTGCLN REIGLLNQLT VFDVSYNNLV GSLPETIGDM KSLEQLNIAH
     NKFSGYIPES ICRLPRLENF TYSYNFFSGE PPACLRLQEF DDRRNCLPSR PMQRSLAECK
     SFSSYPIDCA SFGCSPPSPP PPPPPPPPPP PPPPPPPPPP PPPPPPPYVY PSPPPPPPSP
     PPYVYPPPPP PYVYPPPPSP PYVYPPPPPS PQPYMYPSPP CNDLPTPVHY
 
 
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