LRX7_ARATH
ID LRX7_ARATH Reviewed; 433 AA.
AC Q4PSE6;
DT 13-JUL-2010, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2005, sequence version 1.
DT 25-MAY-2022, entry version 103.
DE RecName: Full=Leucine-rich repeat extensin-like protein 7;
DE Short=AtLRX7;
DE Short=LRR/EXTENSIN7;
DE AltName: Full=Cell wall hydroxyproline-rich glycoprotein;
DE Flags: Precursor;
GN Name=LRX7; OrderedLocusNames=At5g25550; ORFNames=T14C9.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12644681; DOI=10.1104/pp.102.014928;
RA Baumberger N., Doesseger B., Guyot R., Diet A., Parsons R.L., Clark M.A.,
RA Simmons M.P., Bedinger P., Goff S.A., Ringli C., Keller B.;
RT "Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis
RT and rice. A conserved family of cell wall proteins form a vegetative and a
RT reproductive clade.";
RL Plant Physiol. 131:1313-1326(2003).
CC -!- FUNCTION: Modulates cell morphogenesis by regulating cell wall
CC formation and assembly, and/or growth polarization. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in flowers and pollen.
CC {ECO:0000269|PubMed:12644681}.
CC -!- PTM: Hydroxylated on proline residues in the S-P-P-P-P repeat.
CC {ECO:0000250}.
CC -!- PTM: O-glycosylated on hydroxyprolines. {ECO:0000250}.
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DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93461.1; -; Genomic_DNA.
DR EMBL; DQ056690; AAY78836.1; -; mRNA.
DR RefSeq; NP_197937.1; NM_122466.2.
DR AlphaFoldDB; Q4PSE6; -.
DR SMR; Q4PSE6; -.
DR STRING; 3702.AT5G25550.1; -.
DR PaxDb; Q4PSE6; -.
DR PRIDE; Q4PSE6; -.
DR ProteomicsDB; 238617; -.
DR EnsemblPlants; AT5G25550.1; AT5G25550.1; AT5G25550.
DR GeneID; 832630; -.
DR Gramene; AT5G25550.1; AT5G25550.1; AT5G25550.
DR KEGG; ath:AT5G25550; -.
DR Araport; AT5G25550; -.
DR TAIR; locus:2179449; AT5G25550.
DR eggNOG; ENOG502QQ2D; Eukaryota.
DR HOGENOM; CLU_000288_23_1_1; -.
DR InParanoid; Q4PSE6; -.
DR OMA; MECKVFL; -.
DR OrthoDB; 826997at2759; -.
DR PhylomeDB; Q4PSE6; -.
DR PRO; PR:Q4PSE6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q4PSE6; baseline and differential.
DR Genevisible; Q4PSE6; AT.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0005199; F:structural constituent of cell wall; ISS:TAIR.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR Gene3D; 3.80.10.10; -; 2.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00560; LRR_1; 1.
DR Pfam; PF13855; LRR_8; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Glycoprotein; Hydroxylation;
KW Leucine-rich repeat; Reference proteome; Repeat; Secreted; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..433
FT /note="Leucine-rich repeat extensin-like protein 7"
FT /id="PRO_0000395467"
FT REPEAT 98..122
FT /note="LRR 1"
FT REPEAT 123..145
FT /note="LRR 2"
FT REPEAT 146..170
FT /note="LRR 3"
FT REPEAT 171..194
FT /note="LRR 4"
FT REPEAT 196..217
FT /note="LRR 5"
FT REPEAT 219..239
FT /note="LRR 6"
FT REPEAT 241..265
FT /note="LRR 7"
FT REPEAT 266..289
FT /note="LRR 8"
FT REPEAT 290..313
FT /note="LRR 9"
FT REGION 380..433
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 381..433
FT /note="Contains the Ser-Pro(4) repeats"
FT COMPBIAS 386..433
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 71
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 267
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 340
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 433 AA; 48088 MW; 439DBB7306A4DC80 CRC64;
MRIYQPTLLI FTTVVLLSIS AVAPGGSRQL LYTRDDPITI PPYLIFENVR LERAYVALQA
WKRAMISDPW NLTTNWFGSR VCDYNGVVCS ESLDDPLVKT VSGVDLNQGD IAGHLPEELG
LLTDIALFHV NSNRFCGTLP VGFSQLSLLF ELDLSNNRFA GKFPEVVIGL PKLKYLDLRY
NEFEGELPES LFDKDLDALF LNSNRFRSKI PVNMGNSPVS VLVLASNRFE GCIPPSFGKM
GKTLNEIILM DNGLQSCIPN DMGLLQNVTV LDISYNWLVG ELPKSMGQME NLEVLNVERN
MLSGLIPDEL CSLEKLRDFR YGSNYFTGEP ATCRYLENYN YTMNCFKDVR DQRSMMECKM
FLSKPVDCDS FKCSPGSSCF SPPPSQISPS SQPLAPAPSP TSPPLSTPPP ARPCPPVYSP
PPPPPLSLAP SMN
