LSH10_ARATH
ID LSH10_ARATH Reviewed; 177 AA.
AC Q9S7R3;
DT 19-FEB-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10;
DE AltName: Full=Protein ORGAN BOUNDARY 10;
GN Name=LSH10; Synonyms=OBO10; OrderedLocusNames=At2g42610; ORFNames=F14N22;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Matityahu A., Goldway M.;
RL Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Ag-0, cv. An-1, cv. Br-0, cv. C24, cv. Ct-1, cv. Cvi-1,
RC cv. Edi-0, cv. Ga-0, cv. Kas-2, cv. Kin-0, cv. Landsberg erecta, cv. Ll-0,
RC cv. Lz-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Se-0,
RC cv. Sorbo, cv. Tsu-1, cv. Van-0, cv. Wa-1, and cv. Wassilewskija;
RX PubMed=17435248; DOI=10.1534/genetics.107.071928;
RA Ehrenreich I.M., Stafford P.A., Purugganan M.D.;
RT "The genetic architecture of shoot branching in Arabidopsis thaliana: a
RT comparative assessment of candidate gene associations vs. quantitative
RT trait locus mapping.";
RL Genetics 176:1223-1236(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=14871309; DOI=10.1111/j.1365-313x.2003.01993.x;
RA Zhao L., Nakazawa M., Takase T., Manabe K., Kobayashi M., Seki M.,
RA Shinozaki K., Matsui M.;
RT "Overexpression of LSH1, a member of an uncharacterised gene family, causes
RT enhanced light regulation of seedling development.";
RL Plant J. 37:694-706(2004).
RN [8]
RP GENE FAMILY.
RX PubMed=21245300; DOI=10.1073/pnas.1018542108;
RA Cho E., Zambryski P.C.;
RT "Organ boundary1 defines a gene expressed at the junction between the shoot
RT apical meristem and lateral organs.";
RL Proc. Natl. Acad. Sci. U.S.A. 108:2154-2159(2011).
RN [9]
RP DNA-BINDING, AND GENE FAMILY.
RX PubMed=23146749; DOI=10.1186/1745-6150-7-39;
RA Iyer L.M., Aravind L.;
RT "ALOG domains: provenance of plant homeotic and developmental regulators
RT from the DNA-binding domain of a novel class of DIRS1-type retroposons.";
RL Biol. Direct 7:39-39(2012).
CC -!- FUNCTION: Probable transcription regulator that acts as a developmental
CC regulator by promoting cell growth in response to light. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the plant homeotic and developmental regulators
CC ALOG protein family. {ECO:0000305}.
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DR EMBL; AF218765; AAF24517.1; -; mRNA.
DR EMBL; EF597874; ABQ85148.1; -; Genomic_DNA.
DR EMBL; EF597875; ABQ85149.1; -; Genomic_DNA.
DR EMBL; EF597876; ABQ85150.1; -; Genomic_DNA.
DR EMBL; EF597877; ABQ85151.1; -; Genomic_DNA.
DR EMBL; EF597878; ABQ85152.1; -; Genomic_DNA.
DR EMBL; EF597879; ABQ85153.1; -; Genomic_DNA.
DR EMBL; EF597880; ABQ85154.1; -; Genomic_DNA.
DR EMBL; EF597881; ABQ85155.1; -; Genomic_DNA.
DR EMBL; EF597882; ABQ85156.1; -; Genomic_DNA.
DR EMBL; EF597883; ABQ85157.1; -; Genomic_DNA.
DR EMBL; EF597884; ABQ85158.1; -; Genomic_DNA.
DR EMBL; EF597885; ABQ85159.1; -; Genomic_DNA.
DR EMBL; EF597886; ABQ85160.1; -; Genomic_DNA.
DR EMBL; EF597887; ABQ85161.1; -; Genomic_DNA.
DR EMBL; EF597888; ABQ85162.1; -; Genomic_DNA.
DR EMBL; EF597889; ABQ85163.1; -; Genomic_DNA.
DR EMBL; EF597890; ABQ85164.1; -; Genomic_DNA.
DR EMBL; EF597891; ABQ85165.1; -; Genomic_DNA.
DR EMBL; EF597892; ABQ85166.1; -; Genomic_DNA.
DR EMBL; EF597893; ABQ85167.1; -; Genomic_DNA.
DR EMBL; EF597894; ABQ85168.1; -; Genomic_DNA.
DR EMBL; EF597895; ABQ85169.1; -; Genomic_DNA.
DR EMBL; EF597896; ABQ85170.1; -; Genomic_DNA.
DR EMBL; EF597897; ABQ85171.1; -; Genomic_DNA.
DR EMBL; AC007087; AAD22993.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10147.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10148.1; -; Genomic_DNA.
DR EMBL; AK118714; BAC43308.1; -; mRNA.
DR EMBL; AK119048; BAC43624.1; -; mRNA.
DR EMBL; BT003740; AAO39968.1; -; mRNA.
DR PIR; A84856; A84856.
DR RefSeq; NP_565978.1; NM_129822.3.
DR RefSeq; NP_850374.1; NM_180043.1.
DR AlphaFoldDB; Q9S7R3; -.
DR BioGRID; 4198; 2.
DR STRING; 3702.AT2G42610.1; -.
DR iPTMnet; Q9S7R3; -.
DR PaxDb; Q9S7R3; -.
DR PRIDE; Q9S7R3; -.
DR ProteomicsDB; 238616; -.
DR EnsemblPlants; AT2G42610.1; AT2G42610.1; AT2G42610.
DR EnsemblPlants; AT2G42610.2; AT2G42610.2; AT2G42610.
DR GeneID; 818861; -.
DR Gramene; AT2G42610.1; AT2G42610.1; AT2G42610.
DR Gramene; AT2G42610.2; AT2G42610.2; AT2G42610.
DR KEGG; ath:AT2G42610; -.
DR Araport; AT2G42610; -.
DR TAIR; locus:2041514; AT2G42610.
DR eggNOG; ENOG502QTET; Eukaryota.
DR HOGENOM; CLU_071168_1_1_1; -.
DR InParanoid; Q9S7R3; -.
DR OMA; PSDHHRQ; -.
DR OrthoDB; 1448554at2759; -.
DR PhylomeDB; Q9S7R3; -.
DR PRO; PR:Q9S7R3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9S7R3; baseline and differential.
DR Genevisible; Q9S7R3; AT.
DR GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009299; P:mRNA transcription; ISS:UniProtKB.
DR GO; GO:0090698; P:post-embryonic plant morphogenesis; ISS:UniProtKB.
DR GO; GO:0009416; P:response to light stimulus; IBA:GO_Central.
DR InterPro; IPR040222; ALOG.
DR InterPro; IPR006936; ALOG_dom.
DR PANTHER; PTHR31165; PTHR31165; 1.
DR Pfam; PF04852; DUF640; 1.
DR PROSITE; PS51697; ALOG; 1.
PE 1: Evidence at protein level;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..177
FT /note="Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10"
FT /id="PRO_0000425297"
FT DOMAIN 25..152
FT /note="ALOG"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01033"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 144..177
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 150..154
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000250"
FT COMPBIAS 1..24
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 163..177
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 177 AA; 19791 MW; 5D8B739FA8BF2578 CRC64;
MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD
FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS LDALIGRLRA AYEENGGPPE
TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
