LSU1_ARATH
ID LSU1_ARATH Reviewed; 94 AA.
AC Q9SCK1; F4IXZ4;
DT 02-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Protein RESPONSE TO LOW SULFUR 1 {ECO:0000303|PubMed:25628631};
GN Name=LSU1 {ECO:0000303|PubMed:25628631};
GN OrderedLocusNames=At3g49580 {ECO:0000312|Araport:AT3G49580};
GN ORFNames=T9C5.170 {ECO:0000312|EMBL:CAB62462.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP INDUCTION BY SULFUR DEFICIENCY.
RX PubMed=15842617; DOI=10.1111/j.1365-313x.2005.02363.x;
RA Maruyama-Nakashita A., Nakamura Y., Watanabe-Takahashi A., Inoue E.,
RA Yamaya T., Takahashi H.;
RT "Identification of a novel cis-acting element conferring sulfur deficiency
RT response in Arabidopsis roots.";
RL Plant J. 42:305-314(2005).
RN [7]
RP INDUCTION BY STRESSFUL ENVIRONMENTAL CONDITIONS, REVIEW, GENE FAMILY, AND
RP NOMENCLATURE.
RX PubMed=25628631; DOI=10.3389/fpls.2014.00774;
RA Sirko A., Wawrzynska A., Rodriguez M.C., Sektas P.;
RT "The family of LSU-like proteins.";
RL Front. Plant Sci. 5:774-774(2014).
CC -!- INTERACTION:
CC Q9SCK1; Q5ICL9: NPR4; NbExp=3; IntAct=EBI-4424157, EBI-1392093;
CC Q9SCK1; Q84MC7: PYL9; NbExp=3; IntAct=EBI-4424157, EBI-2349513;
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9SCK1-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SCK1-2; Sequence=VSP_058564;
CC -!- INDUCTION: By stressful environmental conditions such as salt stress,
CC AgNO(3), and sulfur deficiency. {ECO:0000269|PubMed:15842617,
CC ECO:0000303|PubMed:25628631}.
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DR EMBL; AL132964; CAB62462.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78559.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78560.1; -; Genomic_DNA.
DR EMBL; AK117604; BAC42260.1; -; mRNA.
DR EMBL; BT005036; AAO50569.1; -; mRNA.
DR EMBL; AY086614; AAM63673.1; -; mRNA.
DR PIR; T46235; T46235.
DR RefSeq; NP_001190042.1; NM_001203113.1. [Q9SCK1-2]
DR RefSeq; NP_190527.1; NM_114818.4. [Q9SCK1-1]
DR AlphaFoldDB; Q9SCK1; -.
DR SMR; Q9SCK1; -.
DR IntAct; Q9SCK1; 81.
DR STRING; 3702.AT3G49580.1; -.
DR PaxDb; Q9SCK1; -.
DR PRIDE; Q9SCK1; -.
DR EnsemblPlants; AT3G49580.1; AT3G49580.1; AT3G49580. [Q9SCK1-1]
DR EnsemblPlants; AT3G49580.2; AT3G49580.2; AT3G49580. [Q9SCK1-2]
DR GeneID; 824120; -.
DR Gramene; AT3G49580.1; AT3G49580.1; AT3G49580. [Q9SCK1-1]
DR Gramene; AT3G49580.2; AT3G49580.2; AT3G49580. [Q9SCK1-2]
DR KEGG; ath:AT3G49580; -.
DR Araport; AT3G49580; -.
DR TAIR; locus:2114618; AT3G49580.
DR eggNOG; ENOG502SZ0Q; Eukaryota.
DR InParanoid; Q9SCK1; -.
DR OMA; VKEGMED; -.
DR PhylomeDB; Q9SCK1; -.
DR PRO; PR:Q9SCK1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SCK1; baseline and differential.
DR GO; GO:0098869; P:cellular oxidant detoxification; IEA:InterPro.
DR GO; GO:0010438; P:cellular response to sulfur starvation; IEP:UniProtKB.
DR GO; GO:0009651; P:response to salt stress; IEP:UniProtKB.
DR InterPro; IPR039282; LSU.
DR PANTHER; PTHR34283; PTHR34283; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Coiled coil; Reference proteome.
FT CHAIN 1..94
FT /note="Protein RESPONSE TO LOW SULFUR 1"
FT /id="PRO_0000437692"
FT DOMAIN 13..65
FT /note="Death"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00064"
FT COILED 8..35
FT /evidence="ECO:0000255"
FT VAR_SEQ 28..46
FT /note="Missing (in isoform 2)"
FT /id="VSP_058564"
SQ SEQUENCE 94 AA; 10781 MW; B3808255A936AD08 CRC64;
MANRGGCVTV AAEEMDELRR RNIELSREVA EMKTEMIKLW QRTVVAEEAE EQLCSQLAEL
EVESLEQARD YHDRMLFLMD QISRLSSSSV VSSS
