LTD_ORYSJ
ID LTD_ORYSJ Reviewed; 172 AA.
AC A3BKF2; Q0D605; Q7XIL2;
DT 19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 25-MAY-2022, entry version 75.
DE RecName: Full=Protein LHCP TRANSLOCATION DEFECT;
DE Flags: Precursor;
GN Name=LTD; OrderedLocusNames=Os07g0520800, LOC_Os07g33660;
GN ORFNames=OJ1657_A07.104, OJ1793_E11.12, OsJ_24479;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-172.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in the import of light-harvesting complex proteins
CC (LHCP) and subsequent routing of these proteins to the chloroplast
CC signal recognition particle (SRP) pathway. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC79654.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD30420.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF21718.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003850; BAC79654.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003930; BAD30420.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF21718.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000144; EAZ40041.1; -; Genomic_DNA.
DR EMBL; AK062845; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015647220.1; XM_015791734.1.
DR AlphaFoldDB; A3BKF2; -.
DR SMR; A3BKF2; -.
DR STRING; 4530.OS07T0520800-01; -.
DR PaxDb; A3BKF2; -.
DR GeneID; 4343402; -.
DR KEGG; osa:4343402; -.
DR eggNOG; ENOG502RYRG; Eukaryota.
DR HOGENOM; CLU_132294_0_0_1; -.
DR InParanoid; A3BKF2; -.
DR OrthoDB; 1468489at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; A3BKF2; OS.
DR GO; GO:0009941; C:chloroplast envelope; IBA:GO_Central.
DR GO; GO:0009570; C:chloroplast stroma; IBA:GO_Central.
DR GO; GO:0090391; P:granum assembly; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IBA:GO_Central.
DR Gene3D; 1.25.40.20; -; 1.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR044242; LTD-like.
DR PANTHER; PTHR47317; PTHR47317; 1.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
PE 2: Evidence at transcript level;
KW ANK repeat; Chloroplast; Plastid; Protein transport; Reference proteome;
KW Transit peptide; Transport.
FT TRANSIT 1..28
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 29..172
FT /note="Protein LHCP TRANSLOCATION DEFECT"
FT /id="PRO_0000413433"
FT REPEAT 114..146
FT /note="ANK"
SQ SEQUENCE 172 AA; 18500 MW; E254788CC9E6C334 CRC64;
MASIPCTFQL SARASSASAA AAARRSPRAA ARLGWLRPSR LSAVVPASES GRVGPTCFFK
FGNKDAEGAG IYGSQGRDDF DRDDVEQYFN YMGMLAVEGT YDKMEALLNQ DIHPVDILLM
LAASEGDKPK LEELLRAGAK YDVKDVDGRT ALDRAADDTR EFILGFAATL AA
