LTI6A_ORYSJ
ID LTI6A_ORYSJ Reviewed; 56 AA.
AC Q8H5T6; Q0D4B9;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 25-MAY-2022, entry version 91.
DE RecName: Full=Hydrophobic protein LTI6A;
DE AltName: Full=Low temperature-induced protein 6A;
GN Name=LTI6A; Synonyms=DRR1; OrderedLocusNames=Os07g0635900, LOC_Os07g44180;
GN ORFNames=OJ1136_D11.102, OsJ_25274 {ECO:0000312|EMBL:EAZ40796.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND
RP INDUCTION.
RC STRAIN=cv. CT6748-8-CA-17; TISSUE=Seedling;
RX PubMed=15656983; DOI=10.1016/j.gene.2004.09.033;
RA Morsy M.R., Almutairi A.M., Gibbons J., Yun S.J., De Los Reyes B.G.;
RT "The OsLti6 genes encoding low-molecular-weight membrane proteins are
RT differentially expressed in rice cultivars with contrasting sensitivity to
RT low temperature.";
RL Gene 344:171-180(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Yukihikari;
RA Akiyama T.;
RT "Rice homologs of the barley low-temperature induced gene blt101 are
RT differentially regulated by ABA, methyl jasmonate, ethephon, and drought
RT stress.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Plays a role in the regulation of membrane potential. Could
CC mediate a proton leak (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in shoot of cold stressed seedlings.
CC {ECO:0000269|PubMed:15656983}.
CC -!- INDUCTION: Early induction by low temperature and abscisic acid (ABA).
CC Late induction by drought and salt stresses.
CC {ECO:0000269|PubMed:15656983}.
CC -!- SIMILARITY: Belongs to the UPF0057 (PMP3) family. {ECO:0000305}.
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DR EMBL; AY607689; AAT37941.1; -; mRNA.
DR EMBL; AY554050; AAS72305.1; -; mRNA.
DR EMBL; AP003749; BAC16385.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22304.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02817.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ40796.1; -; Genomic_DNA.
DR EMBL; AK121089; BAH00311.1; -; mRNA.
DR RefSeq; XP_015647973.1; XM_015792487.1.
DR AlphaFoldDB; Q8H5T6; -.
DR STRING; 4530.OS07T0635900-01; -.
DR PaxDb; Q8H5T6; -.
DR EnsemblPlants; Os07t0635900-01; Os07t0635900-01; Os07g0635900.
DR GeneID; 4344028; -.
DR Gramene; Os07t0635900-01; Os07t0635900-01; Os07g0635900.
DR KEGG; osa:4344028; -.
DR eggNOG; KOG1773; Eukaryota.
DR HOGENOM; CLU_107649_6_2_1; -.
DR InParanoid; Q8H5T6; -.
DR OMA; GVIHACF; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q8H5T6; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009737; P:response to abscisic acid; IEP:Gramene.
DR GO; GO:0009409; P:response to cold; IEP:Gramene.
DR GO; GO:0009651; P:response to salt stress; IEP:Gramene.
DR GO; GO:0009414; P:response to water deprivation; IEP:Gramene.
DR InterPro; IPR000612; PMP3.
DR PANTHER; PTHR21659; PTHR21659; 1.
DR Pfam; PF01679; Pmp3; 1.
DR PROSITE; PS01309; UPF0057; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..56
FT /note="Hydrophobic protein LTI6A"
FT /id="PRO_0000193981"
FT TRANSMEM 11..31
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 34..54
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 56 AA; 6230 MW; 8F12C4BA45EAA6E7 CRC64;
MADSTATCID IILAIILPPL GVFFKFGCGI EFWICLLLTF FGYLPGIIYA VWVITK
