M17_ARATH
ID M17_ARATH Reviewed; 280 AA.
AC Q9S7S3; Q8L7T1;
DT 12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Late embryogenesis abundant protein M17 {ECO:0000303|PubMed:10394954};
DE Short=AtM17 {ECO:0000303|PubMed:10394954};
DE Flags: Precursor;
GN Name=M17 {ECO:0000303|PubMed:10394954};
GN OrderedLocusNames=At2g41260 {ECO:0000312|Araport:AT2G41260};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DEVELOPMENTAL STAGE, AND
RP INDUCTION BY COLD STRESS.
RC STRAIN=cv. Columbia;
RX PubMed=10394954; DOI=10.1023/a:1026403215270;
RA Raynal M., Guilleminot J., Gueguen C., Cooke R., Delseny M., Gruber V.;
RT "Structure, organization and expression of two closely related novel Lea
RT (late-embryogenesis-abundant) genes in Arabidopsis thaliana.";
RL Plant Mol. Biol. 40:153-165(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: May be involved in the acquisition of desiccation tolerance
CC during late phase of embryogenesis. {ECO:0000305|PubMed:10394954}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9S7S3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9S7S3-2; Sequence=VSP_058881;
CC -!- DEVELOPMENTAL STAGE: Expressed exclusively in seeds from late
CC embryogenesis until 1 day after imbibition.
CC {ECO:0000269|PubMed:10394954}.
CC -!- INDUCTION: Induced by cold stress. {ECO:0000269|PubMed:10394954}.
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DR EMBL; AF076979; AAC27641.1; -; Genomic_DNA.
DR EMBL; AC005662; AAC78545.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09954.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09955.1; -; Genomic_DNA.
DR EMBL; AY128274; AAM91083.1; -; mRNA.
DR PIR; G84839; G84839.
DR RefSeq; NP_181659.2; NM_129691.3. [Q9S7S3-2]
DR RefSeq; NP_973656.1; NM_201927.3. [Q9S7S3-1]
DR AlphaFoldDB; Q9S7S3; -.
DR STRING; 3702.AT2G41260.2; -.
DR PaxDb; Q9S7S3; -.
DR PRIDE; Q9S7S3; -.
DR ProteomicsDB; 238759; -. [Q9S7S3-1]
DR EnsemblPlants; AT2G41260.1; AT2G41260.1; AT2G41260. [Q9S7S3-2]
DR EnsemblPlants; AT2G41260.2; AT2G41260.2; AT2G41260. [Q9S7S3-1]
DR GeneID; 818725; -.
DR Gramene; AT2G41260.1; AT2G41260.1; AT2G41260. [Q9S7S3-2]
DR Gramene; AT2G41260.2; AT2G41260.2; AT2G41260. [Q9S7S3-1]
DR KEGG; ath:AT2G41260; -.
DR Araport; AT2G41260; -.
DR TAIR; locus:2040252; AT2G41260.
DR InParanoid; Q9S7S3; -.
DR OMA; YCCRSPQ; -.
DR PhylomeDB; Q9S7S3; -.
DR PRO; PR:Q9S7S3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9S7S3; baseline and differential.
DR GO; GO:0005773; C:vacuole; HDA:TAIR.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; TAS:TAIR.
DR InterPro; IPR010800; GRP.
DR PANTHER; PTHR37389; PTHR37389; 3.
PE 2: Evidence at transcript level;
KW Alternative splicing; Glycoprotein; Reference proteome; Repeat; Signal.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..280
FT /note="Late embryogenesis abundant protein M17"
FT /id="PRO_5009348827"
FT REPEAT 76..97
FT /note="1"
FT /evidence="ECO:0000305"
FT REPEAT 131..152
FT /note="2"
FT /evidence="ECO:0000305"
FT REPEAT 186..207
FT /note="3"
FT /evidence="ECO:0000305"
FT REPEAT 241..262
FT /note="4"
FT /evidence="ECO:0000305"
FT REGION 76..262
FT /note="4 X 22 AA repeats, Cys-rich"
FT /evidence="ECO:0000305"
FT REGION 163..184
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 218..239
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 23
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT VAR_SEQ 73..127
FT /note="Missing (in isoform 2)"
FT /id="VSP_058881"
SQ SEQUENCE 280 AA; 29559 MW; 52E91864C8035BF6 CRC64;
MGNLKSLVLL ALLFSFSVAV FANTSNDATH DEVKPSTEAT HAIEAQKHDG KPQIAEAQVE
ANDPVVEPQQ DWGGRGGCRW GCCGGWWRGR CRYCCRSQAE ASEVVETVEP NDVEPQQGGR
GGGGGGGGGR GGCRWGCCGG WWRGRCRYCC RSQAEASEVV ETVEPNDVEP QQGGRGGGGG
GGGGRGGCRW GCCGGWWRGR CRYCCRSQAE ASEVVETVEP NDVEPQQGGR GGGGGGGGGR
GGCRWGCCGG WWRGRCRYCC RSQAEANEVV ETVEAQQAKP
