M5162_ARATH
ID M5162_ARATH Reviewed; 317 AA.
AC Q9FKF9;
DT 15-FEB-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 146.
DE RecName: Full=Probable transcription factor At5g61620 {ECO:0000305};
DE AltName: Full=Myb-related protein At5g61620 {ECO:0000305};
GN OrderedLocusNames=At5g61620 {ECO:0000312|Araport:AT5G61620};
GN ORFNames=K11J9.15 {ECO:0000312|EMBL:BAB09006.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP FUNCTION.
RX PubMed=26973252; DOI=10.1016/j.jplph.2016.02.012;
RA Nowak K., Gaj M.D.;
RT "Stress-related function of bHLH109 in somatic embryo induction in
RT Arabidopsis.";
RL J. Plant Physiol. 193:119-126(2016).
CC -!- FUNCTION: Probable transcription factor involved in somatic
CC embryogenesis. Acts as positive regulator of BHLH109.
CC {ECO:0000269|PubMed:26973252}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
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DR EMBL; AB012239; BAB09006.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97498.1; -; Genomic_DNA.
DR RefSeq; NP_200970.1; NM_125556.2.
DR AlphaFoldDB; Q9FKF9; -.
DR SMR; Q9FKF9; -.
DR IntAct; Q9FKF9; 8.
DR STRING; 3702.AT5G61620.1; -.
DR PaxDb; Q9FKF9; -.
DR PRIDE; Q9FKF9; -.
DR ProteomicsDB; 238883; -.
DR EnsemblPlants; AT5G61620.1; AT5G61620.1; AT5G61620.
DR GeneID; 836284; -.
DR Gramene; AT5G61620.1; AT5G61620.1; AT5G61620.
DR KEGG; ath:AT5G61620; -.
DR Araport; AT5G61620; -.
DR TAIR; locus:2151621; AT5G61620.
DR eggNOG; ENOG502RYHB; Eukaryota.
DR HOGENOM; CLU_038424_5_2_1; -.
DR InParanoid; Q9FKF9; -.
DR OMA; SMEYMPI; -.
DR OrthoDB; 1071185at2759; -.
DR PhylomeDB; Q9FKF9; -.
DR PRO; PR:Q9FKF9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FKF9; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR001878; Znf_CCHC.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 3: Inferred from homology;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..317
FT /note="Probable transcription factor At5g61620"
FT /id="PRO_0000438828"
FT DOMAIN 102..158
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT ZN_FING 12..25
FT /note="CCHC-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00047"
FT DNA_BIND 130..154
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 77..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 173..206
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 173..187
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 188..206
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 317 AA; 35014 MW; 0364750CC3BF1781 CRC64;
MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE VTALRKSLSL
GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT AHEKKKGKPW TEEEHRNFLI
GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK
ERNSQDASTK TPPKQPITGI QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI
MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
QATGASDLTG HGVIHVK
