MAD13_ORYSJ
ID MAD13_ORYSJ Reviewed; 270 AA.
AC Q2QW53; Q0IPG1; Q6Q9J0; Q7XB98; Q9SPN2;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 04-APR-2006, sequence version 2.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=MADS-box transcription factor 13;
DE AltName: Full=OsMADS13;
DE AltName: Full=RMADS206;
GN Name=MADS13; Synonyms=MAF1; OrderedLocusNames=Os12g0207000, LOC_Os12g10540;
GN ORFNames=OsJ_35557 {ECO:0000312|EMBL:EEE52930.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND DEVELOPMENTAL STAGE.
RX PubMed=10528264;
RX DOI=10.1002/(sici)1520-6408(1999)25:3<237::aid-dvg6>3.0.co;2-l;
RA Lopez-Dee Z.P., Wittich P., Enrico Pe M.E., Rigola D., Del Buono I.,
RA Gorla M.S., Kater M.M., Colombo L.;
RT "OsMADS13, a novel rice MADS-box gene expressed during ovule development.";
RL Dev. Genet. 25:237-244(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
RA Yao Q., Peng R., Xiong A.;
RT "Characterization of two rice MADS box genes that control flowering time.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [9]
RP INTERACTION WITH MADS6; MADS7 AND MADS8.
RX PubMed=12395189; DOI=10.1007/s00438-002-0746-6;
RA Favaro R., Immink R.G., Ferioli V., Bernasconi B., Byzova M.,
RA Angenent G.C., Kater M.M., Colombo L.;
RT "Ovule-specific MADS-box proteins have conserved protein-protein
RT interactions in monocot and dicot plants.";
RL Mol. Genet. Genomics 268:152-159(2002).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBUNIT: May interact with MADS6, MADS7 and MADS8.
CC -!- INTERACTION:
CC Q2QW53; Q0J466: MADS7; NbExp=3; IntAct=EBI-627947, EBI-627872;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q2QW53-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q2QW53-2; Sequence=VSP_017782;
CC -!- DEVELOPMENTAL STAGE: Expressed during ovule development. First detected
CC in the ovule primordia and later in the inner and outer integuments,
CC nucellus tissue and the inner layer of the carpel wall.
CC {ECO:0000269|PubMed:10528264}.
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DR EMBL; AF151693; AAF13594.1; -; mRNA.
DR EMBL; AY332475; AAQ01161.1; -; mRNA.
DR EMBL; AY551912; AAS59818.1; -; mRNA.
DR EMBL; DP000011; ABA96136.2; -; Genomic_DNA.
DR EMBL; DP000011; ABG21911.1; -; Genomic_DNA.
DR EMBL; DP000011; ABG21912.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF29404.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT16298.1; -; Genomic_DNA.
DR EMBL; CM000149; EEE52930.1; -; Genomic_DNA.
DR EMBL; AK070425; BAG91943.1; -; mRNA.
DR RefSeq; XP_015618486.1; XM_015763000.1. [Q2QW53-1]
DR RefSeq; XP_015618487.1; XM_015763001.1. [Q2QW53-1]
DR AlphaFoldDB; Q2QW53; -.
DR SMR; Q2QW53; -.
DR IntAct; Q2QW53; 8.
DR STRING; 4530.OS12T0207000-01; -.
DR PaxDb; Q2QW53; -.
DR PRIDE; Q2QW53; -.
DR EnsemblPlants; Os12t0207000-01; Os12t0207000-01; Os12g0207000. [Q2QW53-1]
DR GeneID; 4351753; -.
DR Gramene; Os12t0207000-01; Os12t0207000-01; Os12g0207000. [Q2QW53-1]
DR KEGG; osa:4351753; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_0_1; -.
DR InParanoid; Q2QW53; -.
DR OMA; AETSNAC; -.
DR OrthoDB; 1276680at2759; -.
DR PlantReactome; R-OSA-9609102; Flower development.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000007752; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q2QW53; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0048283; P:indeterminate inflorescence morphogenesis; IMP:Gramene.
DR GO; GO:0048481; P:plant ovule development; IMP:Gramene.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0010622; P:specification of ovule identity; TAS:AgBase.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..270
FT /note="MADS-box transcription factor 13"
FT /id="PRO_0000229898"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 90..180
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT VAR_SEQ 146..214
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.2"
FT /id="VSP_017782"
FT CONFLICT 61..62
FT /note="NN -> SS (in Ref. 2; AAS59818)"
FT /evidence="ECO:0000305"
FT CONFLICT 139
FT /note="S -> A (in Ref. 1; AAF13594)"
FT /evidence="ECO:0000305"
FT CONFLICT 261
FT /note="A -> T (in Ref. 1; AAF13594)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 270 AA; 30269 MW; A10FBF98D4B282C4 CRC64;
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN
NNVKATIDRY KKAHACGSTS GAPLIEVNAQ QYYQQESAKL RHQIQMLQNT NKHLVGDNVS
NLSLKELKQL ESRLEKGISK IRARKNELLA SEINYMAKRE IELQNDNMDL RTKIAEEEQQ
LQQVTVARSA AMELQAAAAA QQQQQNPFAV AAAQLDMKCF FPLNLFEAAA QVQAVAAQRQ
QIIPTELNLG YHHHLAIPGA AAADAPPPHF
