MAD14_ORYSJ
ID MAD14_ORYSJ Reviewed; 246 AA.
AC Q10CQ1; B9FBV1; Q10CQ2; Q7Y023; Q8LLN3; Q9M7C6; Q9MAY7; Q9SEX0;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JUL-2007, sequence version 2.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=MADS-box transcription factor 14;
DE AltName: Full=FDRMADS6;
DE AltName: Full=OsMADS14;
DE AltName: Full=Protein AGAMOUS-like 10;
DE AltName: Full=Protein APETALA1-like B;
DE AltName: Full=RMADS211;
GN Name=MADS14; Synonyms=AGL10, RAP1B;
GN OrderedLocusNames=Os03g0752800, LOC_Os03g54160;
GN ORFNames=OJ1112_G08.13, OsJ_12598 {ECO:0000312|EMBL:EEE59943.1},
GN OSJNBa0032E21.04, OSJNBa0047E24.2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, AND INTERACTION
RP WITH MADS6.
RC TISSUE=Flower;
RX PubMed=10444103; DOI=10.1104/pp.120.4.1193;
RA Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G.;
RT "Determination of the motif responsible for interaction between the rice
RT APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.";
RL Plant Physiol. 120:1193-1204(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC TISSUE=Panicle;
RX PubMed=10945340; DOI=10.1093/pcp/41.6.710;
RA Kyozuka J., Kobayashi T., Morita M., Shimamoto K.;
RT "Spatially and temporally regulated expression of rice MADS box genes with
RT similarity to Arabidopsis class A, B and C genes.";
RL Plant Cell Physiol. 41:710-718(2000).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
RA Yao Q., Peng R., Xiong A.;
RT "Isolation and characterization of rice MADS box gene homologs.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [9]
RP FUNCTION.
RX AGRICOLA=IND22436162; DOI=10.1023/A:1011388620872;
RA Jeon J.-S., Lee S., Nam J., Jung K.-H., Yang W.-S., Yi G.-H., Oh B.-G.,
RA An G.;
RT "Production of transgenic rice plants showing reduced heading date and
RT plant height by ectopic expression of rice MADS-box genes.";
RL Mol. Breed. 6:581-592(2000).
RN [10]
RP INTERACTION WITH MADS1.
RX PubMed=11197326; DOI=10.1023/a:1026517111843;
RA Lim J., Moon Y.-H., An G., Jang S.K.;
RT "Two rice MADS domain proteins interact with OsMADS1.";
RL Plant Mol. Biol. 44:513-527(2000).
CC -!- FUNCTION: Probable transcription factor. May be involved in the control
CC of flowering time. {ECO:0000269|Ref.9}.
CC -!- SUBUNIT: May interact with the K-box of MADS1 and MADS6.
CC -!- INTERACTION:
CC Q10CQ1; Q10PZ9: MADS1; NbExp=4; IntAct=EBI-627890, EBI-627957;
CC Q10CQ1; Q6EU39: MADS6; NbExp=5; IntAct=EBI-627890, EBI-627980;
CC Q10CQ1; Q0J466: MADS7; NbExp=4; IntAct=EBI-627890, EBI-627872;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q10CQ1-1, Q7Y023-1;
CC Sequence=Displayed;
CC Name=2;
CC IsoId=Q10CQ1-2, Q7Y023-2;
CC Sequence=VSP_017783;
CC -!- TISSUE SPECIFICITY: Highly expressed in sterile lemmas, at intermediate
CC levels in stamens, and weakly in lemmas, paleas and carpels.
CC {ECO:0000269|PubMed:10444103}.
CC -!- DEVELOPMENTAL STAGE: Expressed at early stage of flower development in
CC the spikelet (rice flower) apical meristem and later in developing
CC stamens, pistil primordia and differentiated anthers.
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DR EMBL; AF058697; AAF19047.1; -; mRNA.
DR EMBL; AB041020; BAA94342.1; -; mRNA.
DR EMBL; AY332478; AAQ01164.1; -; mRNA.
DR EMBL; AY551916; AAS59822.1; -; mRNA.
DR EMBL; AC092556; AAR87240.1; -; Genomic_DNA.
DR EMBL; AC135225; AAP68361.1; -; Genomic_DNA.
DR EMBL; AF377947; AAM34398.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98924.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98925.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13214.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86428.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE59943.1; -; Genomic_DNA.
DR RefSeq; XP_015631033.1; XM_015775547.1. [Q10CQ1-2]
DR RefSeq; XP_015631034.1; XM_015775548.1. [Q10CQ1-1]
DR AlphaFoldDB; Q10CQ1; -.
DR SMR; Q10CQ1; -.
DR BioGRID; 803177; 1.
DR IntAct; Q10CQ1; 12.
DR STRING; 4530.OS03T0752800-01; -.
DR PaxDb; Q10CQ1; -.
DR PRIDE; Q10CQ1; -.
DR EnsemblPlants; Os03t0752800-02; Os03t0752800-02; Os03g0752800. [Q10CQ1-1]
DR GeneID; 4334140; -.
DR Gramene; Os03t0752800-02; Os03t0752800-02; Os03g0752800. [Q10CQ1-1]
DR KEGG; osa:4334140; -.
DR eggNOG; KOG0014; Eukaryota.
DR InParanoid; Q10CQ1; -.
DR OrthoDB; 1178730at2759; -.
DR PlantReactome; R-OSA-8934036; Long day regulated expression of florigens.
DR PlantReactome; R-OSA-8934257; Transition from vegetative to reproductive shoot apical meristem.
DR PlantReactome; R-OSA-9609102; Flower development.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q10CQ1; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Developmental protein; Differentiation; DNA-binding;
KW Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..246
FT /note="MADS-box transcription factor 14"
FT /id="PRO_0000229899"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 88..178
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 180..199
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 171
FT /note="E -> ENPCSFLQ (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_017783"
FT CONFLICT 27
FT /note="G -> K (in Ref. 1; AAF19047)"
FT /evidence="ECO:0000305"
FT CONFLICT 183
FT /note="V -> L (in Ref. 2; BAA94342)"
FT /evidence="ECO:0000305"
FT CONFLICT 193
FT /note="S -> I (in Ref. 2; BAA94342)"
FT /evidence="ECO:0000305"
FT CONFLICT 225
FT /note="A -> P (in Ref. 2; BAA94342)"
FT /evidence="ECO:0000305"
FT CONFLICT 232
FT /note="V -> E (in Ref. 1; AAF19047)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 246 AA; 28423 MW; 80CF6A3CAFB4084C CRC64;
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLYEYATD
SCMDKILERY ERYSYAEKVL ISAESDTQGN WCHEYRKLKA KVETIQKCQK HLMGEDLESL
NLKELQQLEQ QLENSLKHIR SRKSQLMLES INELQRKEKS LQEENKVLQK ELVEKQKVQK
QQVQWDQTQP QTSSSSSSFM MREALPTTNI SNYPAAAGER IEDVAAGQPQ HVRIGLPPWM
LSHING
