MAD15_ORYSJ
ID MAD15_ORYSJ Reviewed; 267 AA.
AC Q6Q9I2; Q0D939; Q7XIU8; Q947B8; Q9SEW9; Q9XJ63;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 04-APR-2006, sequence version 2.
DT 25-MAY-2022, entry version 114.
DE RecName: Full=MADS-box transcription factor 15;
DE AltName: Full=FDRMADS3;
DE AltName: Full=OsMADS15;
DE AltName: Full=Protein APETALA1-like A;
DE AltName: Full=RMADS215;
GN Name=MADS15; Synonyms=RAP1A;
GN OrderedLocusNames=Os07g0108900, LOC_Os07g01820;
GN ORFNames=OJ1567_G09.109-1, P0585H11.124-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND INTERACTION WITH MADS6.
RC TISSUE=Flower;
RX PubMed=10444103; DOI=10.1104/pp.120.4.1193;
RA Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G.;
RT "Determination of the motif responsible for interaction between the rice
RT APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.";
RL Plant Physiol. 120:1193-1204(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare; TISSUE=Panicle;
RX PubMed=10382970; DOI=10.1093/dnares/6.2.123;
RA Shinozuka Y., Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K.,
RA Sasaki T.;
RT "Isolation and characterization of rice MADS box gene homologues and their
RT RFLP mapping.";
RL DNA Res. 6:123-129(1999).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Gao Z., Chen R., Jia H.-W., Sun C.-R.;
RL Submitted (FEB-2001) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yao Q., Peng R., Xiong A.;
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP DEVELOPMENTAL STAGE.
RX PubMed=10945340; DOI=10.1093/pcp/41.6.710;
RA Kyozuka J., Kobayashi T., Morita M., Shimamoto K.;
RT "Spatially and temporally regulated expression of rice MADS box genes with
RT similarity to Arabidopsis class A, B and C genes.";
RL Plant Cell Physiol. 41:710-718(2000).
RN [9]
RP INTERACTION WITH MADS1.
RX PubMed=11197326; DOI=10.1023/a:1026517111843;
RA Lim J., Moon Y.-H., An G., Jang S.K.;
RT "Two rice MADS domain proteins interact with OsMADS1.";
RL Plant Mol. Biol. 44:513-527(2000).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBUNIT: May interact with the K-box of MADS1 and MADS6.
CC -!- INTERACTION:
CC Q6Q9I2; Q10PZ9: MADS1; NbExp=4; IntAct=EBI-627918, EBI-627957;
CC Q6Q9I2; Q6EU39: MADS6; NbExp=3; IntAct=EBI-627918, EBI-627980;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the floral meristem at very early
CC stage of the spikelet (rice flower) development. Expressed in lemmas,
CC paleas and lodicules from early to late stage of flower development.
CC {ECO:0000269|PubMed:10945340}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL09473.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAC79555.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD30635.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF058698; AAF19048.1; -; mRNA.
DR EMBL; AB003325; BAA81883.1; -; mRNA.
DR EMBL; AF345911; AAL09473.1; ALT_FRAME; mRNA.
DR EMBL; AY551920; AAS59826.1; -; mRNA.
DR EMBL; AP003759; BAC79555.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP004342; BAD30635.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF20634.1; -; Genomic_DNA.
DR EMBL; AP014963; BAS99737.1; -; Genomic_DNA.
DR RefSeq; XP_015645258.1; XM_015789772.1.
DR RefSeq; XP_015645259.1; XM_015789773.1.
DR AlphaFoldDB; Q6Q9I2; -.
DR SMR; Q6Q9I2; -.
DR IntAct; Q6Q9I2; 4.
DR STRING; 4530.OS07T0108900-02; -.
DR PRIDE; Q6Q9I2; -.
DR EnsemblPlants; Os07t0108900-02; Os07t0108900-02; Os07g0108900.
DR GeneID; 4342214; -.
DR Gramene; Os07t0108900-02; Os07t0108900-02; Os07g0108900.
DR KEGG; osa:4342214; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_2_1; -.
DR InParanoid; Q6Q9I2; -.
DR OMA; KSHLMLE; -.
DR OrthoDB; 1178730at2759; -.
DR PlantReactome; R-OSA-8934036; Long day regulated expression of florigens.
DR PlantReactome; R-OSA-8934257; Transition from vegetative to reproductive shoot apical meristem.
DR PlantReactome; R-OSA-9608931; Floral bracts development.
DR PlantReactome; R-OSA-9609102; Flower development.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q6Q9I2; baseline and differential.
DR Genevisible; Q6Q9I2; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..267
FT /note="MADS-box transcription factor 15"
FT /id="PRO_0000229900"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 88..178
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 179..215
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 1
FT /note="M -> MM (in Ref. 4)"
FT /evidence="ECO:0000305"
FT CONFLICT 14..15
FT /note="KI -> SM (in Ref. 3; AAL09473)"
FT /evidence="ECO:0000305"
FT CONFLICT 117
FT /note="L -> H (in Ref. 1; AAF19048)"
FT /evidence="ECO:0000305"
FT CONFLICT 140
FT /note="I -> R (in Ref. 3; AAL09473)"
FT /evidence="ECO:0000305"
FT CONFLICT 221
FT /note="P -> S (in Ref. 3; AAL09473)"
FT /evidence="ECO:0000305"
FT CONFLICT 234
FT /note="E -> Q (in Ref. 3; AAL09473)"
FT /evidence="ECO:0000305"
FT CONFLICT 257
FT /note="L -> F (in Ref. 3; AAL09473)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 267 AA; 30391 MW; 5A31330C64180D92 CRC64;
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAAIVFSP KGKLYEYATD
SRMDKILERY ERYSYAEKAL ISAESESEGN WCHEYRKLKA KIETIQKCHK HLMGEDLESL
NLKELQQLEQ QLESSLKHII SRKSHLMLES ISELQKKERS LQEENKALQK ELVERQKNVR
GQQQVGQWDQ TQVQAQAQAQ PQAQTSSSSS SMLRDQQALL PPQNICYPPV MMGERNDAAA
AAAVAAQGQV QLRIGGLPPW MLSHLNA
