MAD16_ORYSJ
ID MAD16_ORYSJ Reviewed; 224 AA.
AC Q944S9; Q0D9J9; Q9XJ65; Q9ZPM9;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2005, sequence version 2.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=MADS-box transcription factor 16;
DE AltName: Full=OsMADS16;
DE AltName: Full=Protein APETALA3-like;
DE AltName: Full=Protein SUPERWOMAN1;
GN Name=MADS16; Synonyms=SPW1; OrderedLocusNames=Os06g0712700, LOC_Os06g49840;
GN ORFNames=OJ1663_H12.32, P0712G01.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INTERACTION WITH MADS4.
RC TISSUE=Flower;
RX PubMed=10394955; DOI=10.1023/a:1026429922616;
RA Moon Y.-H., Jung J.-Y., Kang H.-G., An G.;
RT "Identification of a rice APETALA3 homologue by yeast two-hybrid
RT screening.";
RL Plant Mol. Biol. 40:167-177(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare; TISSUE=Panicle;
RX PubMed=10382970; DOI=10.1093/dnares/6.2.123;
RA Shinozuka Y., Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K.,
RA Sasaki T.;
RT "Isolation and characterization of rice MADS box gene homologues and their
RT RFLP mapping.";
RL DNA Res. 6:123-129(1999).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. YT14;
RX PubMed=12506001; DOI=10.1242/dev.00294;
RA Nagasawa N., Miyoshi M., Sano Y., Satoh H., Hirano H.-Y., Sakai H.,
RA Nagato Y.;
RT "SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in
RT rice.";
RL Development 130:705-718(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=14558657; DOI=10.1023/a:1025401611354;
RA Xiao H., Wang Y., Liu D., Wang W., Li X., Zhao X., Xu J., Zhai W., Zhu L.;
RT "Functional analysis of the rice AP3 homologue OsMADS16 by RNA
RT interference.";
RL Plant Mol. Biol. 52:957-966(2003).
RN [9]
RP FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH MADS4; MADS6 AND MADS8.
RX PubMed=12905025; DOI=10.1007/s00425-003-1066-8;
RA Lee S., Jeon J.-S., An K., Moon Y.-H., Lee S.-H., Chung Y.-Y., An G.;
RT "Alteration of floral organ identity in rice through ectopic expression of
RT OsMADS16.";
RL Planta 217:904-911(2003).
CC -!- FUNCTION: Probable transcription factor involved in the development of
CC floral organs. Required for normal development of lodicules and stamens
CC (whorls 2 and 3). May function as a heterodimer with MADS4.
CC {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025,
CC ECO:0000269|PubMed:14558657}.
CC -!- SUBUNIT: May interact with the K-box of MADS4, MADS6 and MADS8. May
CC form a heterodimer with MADS4.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in lodicules, stamens and carpels.
CC {ECO:0000269|PubMed:10394955, ECO:0000269|PubMed:12506001,
CC ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}.
CC -!- MISCELLANEOUS: Inhibition of MADS16 expression by RNAi reduces
CC expression of MADS4, and transforms lodicules and stamens into
CC palea/lemma-like and carpel-like organs, respectively.
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DR EMBL; AF077760; AAD19872.1; -; mRNA.
DR EMBL; AB003323; BAA81881.1; -; mRNA.
DR EMBL; AF424549; AAL18851.1; -; Genomic_DNA.
DR EMBL; AP004329; BAD54066.1; -; Genomic_DNA.
DR EMBL; AP005463; BAD54565.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20474.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS99468.1; -; Genomic_DNA.
DR EMBL; AK069317; BAG91373.1; -; mRNA.
DR RefSeq; XP_015641661.1; XM_015786175.1.
DR AlphaFoldDB; Q944S9; -.
DR SMR; Q944S9; -.
DR IntAct; Q944S9; 6.
DR STRING; 4530.OS06T0712700-01; -.
DR PaxDb; Q944S9; -.
DR PRIDE; Q944S9; -.
DR EnsemblPlants; Os06t0712700-01; Os06t0712700-01; Os06g0712700.
DR GeneID; 4342047; -.
DR Gramene; Os06t0712700-01; Os06t0712700-01; Os06g0712700.
DR KEGG; osa:4342047; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_4_1; -.
DR InParanoid; Q944S9; -.
DR OMA; VRHRKYH; -.
DR OrthoDB; 1142137at2759; -.
DR PlantReactome; R-OSA-9609102; Flower development.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q944S9; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0010097; P:specification of stamen identity; TAS:AgBase.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW Activator; Developmental protein; Differentiation; DNA-binding; Flowering;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..224
FT /note="MADS-box transcription factor 16"
FT /id="PRO_0000199501"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 84..174
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT CONFLICT 12
FT /note="E -> K (in Ref. 1; AAD19872 and 3; AAL18851)"
FT /evidence="ECO:0000305"
FT CONFLICT 144
FT /note="T -> S (in Ref. 1; AAD19872)"
FT /evidence="ECO:0000305"
FT CONFLICT 162
FT /note="E -> K (in Ref. 1; AAD19872)"
FT /evidence="ECO:0000305"
FT CONFLICT 171
FT /note="R -> C (in Ref. 1; AAD19872)"
FT /evidence="ECO:0000305"
FT CONFLICT 176..177
FT /note="FG -> W (in Ref. 1; AAD19872)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 224 AA; 25464 MW; A8739E83F936A83E CRC64;
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP
STDIKGIFDR YQQAIGTSLW IEQYENMQRT LSHLKDINRN LRTEIRQRMG EDLDGLEFDE
LRGLEQNVDA ALKEVRHRKY HVITTQTETY KKKVKHSYEA YETLQQELGL REEPAFGFVD
NTGGGWDGGA GAGAAADMFA FRVVPSQPNL HGMAYGGNHD LRLG
