MAD18_ORYSI
ID MAD18_ORYSI Reviewed; 249 AA.
AC A2YNI2; Q6Z4G0; Q9M7C5; Q9SEV1; Q9SMB3;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JUL-2007, sequence version 2.
DT 25-MAY-2022, entry version 80.
DE RecName: Full=MADS-box transcription factor 18;
DE AltName: Full=FDRMADS7;
DE AltName: Full=MADS-box protein 2;
DE AltName: Full=MADS-box protein 28;
DE AltName: Full=OsMADS18;
DE AltName: Full=OsMADS2;
DE AltName: Full=OsMADS28;
GN Name=MADS18; ORFNames=OsI_025875;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 12-249, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Guang-Lu-Ai No.4;
RX PubMed=10814814; DOI=10.1016/s0168-9452(00)00191-6;
RA Jia H.-W., Chen R., Cong B., Cao K.-M., Sun C.-R., Luo D.;
RT "Characterization and transcriptional profiles of two rice MADS-box
RT genes.";
RL Plant Sci. 155:115-122(2000).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Widely expressed. Transcripts accumulate to higher
CC levels in organs that retain meristematic characteristics: in the
CC apical meristem and in the meristematic leaf primordia formed on its
CC flank; in the developing panicle at the early stage of rachis-branch
CC primordia differentiation; in the procambium of the rachis branches and
CC in all floral organ primordia. {ECO:0000269|PubMed:10814814}.
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DR EMBL; CM000132; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AF139665; AAF66998.1; -; mRNA.
DR AlphaFoldDB; A2YNI2; -.
DR SMR; A2YNI2; -.
DR STRING; 39946.A2YNI2; -.
DR Proteomes; UP000007015; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..249
FT /note="MADS-box transcription factor 18"
FT /id="PRO_0000296350"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 88..179
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 184..249
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 184..200
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..249
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 14..15
FT /note="KI -> TM (in Ref. 2; AAF66998)"
FT /evidence="ECO:0000305"
FT CONFLICT 22
FT /note="S -> F (in Ref. 2; AAF66998)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 249 AA; 28285 MW; 9B78618813BF0C08 CRC64;
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVALIVFST KGKLYEFSSH
SSMEGILERY QRYSFDERAV LEPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLDTL
TIKELQQLEH QLEYSLKHIR SKKNQLLFES ISELQKKEKS LKNQNNVLQK LMETEKEKNN
AIINTNREEQ NGATPSTSSP TPVTAPDPIP TTNNSQSQPR GSGESEAQPS PAQAGNSKLP
PWMLRTSHT
