MAD20_ORYSJ
ID MAD20_ORYSJ Reviewed; 233 AA.
AC Q2QQA3; Q0IN73; Q84L55;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 04-APR-2006, sequence version 2.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=MADS-box transcription factor 20;
DE AltName: Full=OsMADS20;
GN Name=MADS20; OrderedLocusNames=Os12g0501700, LOC_Os12g31748;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin; TISSUE=Flower;
RX PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA Lee J., Lee D.-Y., Kang H.-G., An G.;
RT "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT functional genomic analyses: MADS-box genes as a test case.";
RL Plant Cell Physiol. 44:1403-1411(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots.
CC {ECO:0000269|PubMed:14701936}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABA98632.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY250075; AAO92341.1; -; mRNA.
DR EMBL; DP000011; ABA98632.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008218; BAF29842.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT17255.1; -; Genomic_DNA.
DR RefSeq; XP_015619865.1; XM_015764379.1.
DR AlphaFoldDB; Q2QQA3; -.
DR SMR; Q2QQA3; -.
DR STRING; 4530.OS12T0501700-00; -.
DR PRIDE; Q2QQA3; -.
DR EnsemblPlants; Os12t0501700-00; Os12t0501700-00; Os12g0501700.
DR GeneID; 4352275; -.
DR Gramene; Os12t0501700-00; Os12t0501700-00; Os12g0501700.
DR KEGG; osa:4352275; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_2_1; -.
DR InParanoid; Q2QQA3; -.
DR OMA; SMSYDHI; -.
DR OrthoDB; 1178730at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q2QQA3; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..233
FT /note="MADS-box transcription factor 20"
FT /id="PRO_0000229902"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 91..184
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT CONFLICT 95
FT /note="S -> R (in Ref. 1; AAO92341)"
FT /evidence="ECO:0000305"
FT CONFLICT 104
FT /note="R -> K (in Ref. 1; AAO92341)"
FT /evidence="ECO:0000305"
FT CONFLICT 133
FT /note="N -> D (in Ref. 1; AAO92341)"
FT /evidence="ECO:0000305"
FT CONFLICT 170
FT /note="C -> S (in Ref. 1; AAO92341)"
FT /evidence="ECO:0000305"
FT CONFLICT 177
FT /note="K -> E (in Ref. 1; AAO92341)"
FT /evidence="ECO:0000305"
FT CONFLICT 186
FT /note="T -> I (in Ref. 1; AAO92341)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 233 AA; 26120 MW; E6FC17A07066E7A0 CRC64;
MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS
HTTMERILEK YDRHELLSEG NNVIEEFPEL EGSMSYDHIK LRGRIEALKK SQRNLMGQEL
DSLTLQDIQQ LENQIDTSLN NIRSRKEKLL MEKNTILEKK ITELETLHTC IRASPTKAAA
PPACNTADAF VPNLNICCGD SGEPETVTAP LGWTSSNNGL PWWMLQSSSN GKS
