MAD22_ORYSJ
ID MAD22_ORYSJ Reviewed; 228 AA.
AC Q9XJ66; D3U2H0; Q0DXD1;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=MADS-box transcription factor 22;
DE AltName: Full=OsMADS22;
GN Name=MADS22; Synonyms=RMD1; OrderedLocusNames=Os02g0761000, LOC_Os02g52340;
GN ORFNames=OJ1175_B01.24, OsJ_08471 {ECO:0000312|EMBL:EEE57847.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=10382970; DOI=10.1093/dnares/6.2.123;
RA Shinozuka Y., Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K.,
RA Sasaki T.;
RT "Isolation and characterization of rice MADS box gene homologues and their
RT RFLP mapping.";
RL DNA Res. 6:123-129(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND DEVELOPMENTAL
RP STAGE.
RC STRAIN=cv. Yukihikari;
RX PubMed=15682279; DOI=10.1007/s00438-004-1093-6;
RA Sentoku N., Kato H., Kitano H., Imai R.;
RT "OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-
RT vegetative tissues and its ectopic expression induces spikelet meristem
RT indeterminacy.";
RL Mol. Genet. Genomics 273:1-9(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yoon U.H., Kim Y.H.;
RT "Molecular cloning of MADS-box transcription factor 22 gene in rice.";
RL Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=18182025; DOI=10.1111/j.1365-313x.2008.03406.x;
RA Lee S., Choi S.C., An G.;
RT "Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative
RT regulators of brassinosteroid responses.";
RL Plant J. 54:93-105(2008).
CC -!- FUNCTION: Probable transcription factor. May be required for spikelet
CC (rice flower) development (PubMed:15682279). Transcription factor that
CC functions to support the MADS55 in its function as negative regulator
CC of brassinosteroid signaling (PubMed:18182025).
CC {ECO:0000269|PubMed:15682279, ECO:0000269|PubMed:18182025}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in palea and stamen primordia
CC (PubMed:15682279). Expressed in shoots and coleoptiles
CC (PubMed:18182025). {ECO:0000269|PubMed:15682279,
CC ECO:0000269|PubMed:18182025}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the L1 cell layer of the embryo 2
CC days after pollination. {ECO:0000269|PubMed:15682279}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:18182025}.
CC -!- MISCELLANEOUS: Plants over-expressing MADS22 produce shortened panicles
CC and stems. {ECO:0000269|PubMed:18182025}.
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DR EMBL; AB003322; BAA81880.1; -; mRNA.
DR EMBL; AB107957; BAD93335.1; -; mRNA.
DR EMBL; FJ750938; ACY26068.1; -; mRNA.
DR EMBL; AP004159; BAD19410.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10107.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81031.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE57847.1; -; Genomic_DNA.
DR RefSeq; XP_015624915.1; XM_015769429.1.
DR AlphaFoldDB; Q9XJ66; -.
DR SMR; Q9XJ66; -.
DR IntAct; Q9XJ66; 2.
DR STRING; 4530.OS02T0761000-01; -.
DR PaxDb; Q9XJ66; -.
DR PRIDE; Q9XJ66; -.
DR EnsemblPlants; Os02t0761000-01; Os02t0761000-01; Os02g0761000.
DR GeneID; 4330805; -.
DR Gramene; Os02t0761000-01; Os02t0761000-01; Os02g0761000.
DR KEGG; osa:4330805; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_14_1_1; -.
DR InParanoid; Q9XJ66; -.
DR OMA; MMAREKI; -.
DR OrthoDB; 1301596at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q9XJ66; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0030154; P:cell differentiation; IMP:Gramene.
DR GO; GO:0009908; P:flower development; IMP:Gramene.
DR GO; GO:1900458; P:negative regulation of brassinosteroid mediated signaling pathway; IMP:UniProtKB.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; Differentiation; DNA-binding; Flowering; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..228
FT /note="MADS-box transcription factor 22"
FT /id="PRO_0000229904"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 86..176
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 189..217
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 189..214
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 228 AA; 25593 MW; 3A87221A30AB8CD6 CRC64;
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSHFASS
SMNEIIDKYN THSNNLGKAE QPSLDLNLEH SKYAHLNEQL AEASLRLRQM RGEELEGLSI
DELQQLEKNL EAGLHRVMLT KDQQFMEQIS ELQRKSSQLA EENMQLRNQV SQISPAEKQV
VDTENFVTEG QSSESVMTAL HSGSSQSQDN DDGSDVSLKL GLPCGAWK
