MAD23_ORYSJ
ID MAD23_ORYSJ Reviewed; 159 AA.
AC Q6VAM4; Q0J5I5; Q6ZKS9; Q84NC6;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=MADS-box transcription factor 23;
DE AltName: Full=OsMADS23;
GN Name=MADS23; OrderedLocusNames=Os08g0431900, LOC_Os08g33488;
GN ORFNames=OJ1111_B08.22;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin;
RX PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA Lee J., Lee D.-Y., Kang H.-G., An G.;
RT "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT functional genomic analyses: MADS-box genes as a test case.";
RL Plant Cell Physiol. 44:1403-1411(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6VAM4-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6VAM4-2; Sequence=VSP_017784, VSP_017785;
CC -!- TISSUE SPECIFICITY: Expressed in seedling roots and developing seeds.
CC {ECO:0000269|PubMed:14701936}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC99345.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY177694; AAO47704.1; -; mRNA.
DR EMBL; AY345220; AAQ23141.1; -; mRNA.
DR EMBL; AP003868; BAC99345.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008214; BAF23780.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT05563.1; -; Genomic_DNA.
DR AlphaFoldDB; Q6VAM4; -.
DR SMR; Q6VAM4; -.
DR STRING; 4530.OS08T0431900-00; -.
DR PaxDb; Q6VAM4; -.
DR PRIDE; Q6VAM4; -.
DR EnsemblPlants; Os08t0431900-00; Os08t0431900-00; Os08g0431900. [Q6VAM4-1]
DR Gramene; Os08t0431900-00; Os08t0431900-00; Os08g0431900. [Q6VAM4-1]
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_4_1; -.
DR InParanoid; Q6VAM4; -.
DR OMA; DPHLTMN; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6VAM4; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..159
FT /note="MADS-box transcription factor 23"
FT /id="PRO_0000229905"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 86..159
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT VAR_SEQ 88..96
FT /note="LWQQEAASL -> NIPPGIGCG (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14701936"
FT /id="VSP_017784"
FT VAR_SEQ 97..159
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14701936"
FT /id="VSP_017785"
SQ SEQUENCE 159 AA; 18362 MW; 5234344171EC59D2 CRC64;
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KARELSILCD AEVGLLVFSS TSRLYDFASS
SMKSIIERYN ETKEDPHQTM NASSEAKLWQ QEAASLRQQL HNLQEYHRQL LGQQLSGLDV
EDLQNLESKL EMSLKNIRLR KDNVMMDQIQ ELSRKVVTT
