MAD26_ORYSJ
ID MAD26_ORYSJ Reviewed; 222 AA.
AC Q0J8G8; B7EFX0; Q8L887; Q9XH60; Q9XJ62;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=MADS-box transcription factor 26;
DE AltName: Full=FDRMADS3;
DE AltName: Full=OsMADS26;
DE AltName: Full=RMADS220;
GN Name=MADS26; OrderedLocusNames=Os08g0112700, LOC_Os08g02070;
GN ORFNames=P0498H04.24;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare; TISSUE=Root;
RX PubMed=10382970; DOI=10.1093/dnares/6.2.123;
RA Shinozuka Y., Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K.,
RA Sasaki T.;
RT "Isolation and characterization of rice MADS box gene homologues and their
RT RFLP mapping.";
RL DNA Res. 6:123-129(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yao Q., Peng R., Xiong A.;
RT "Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP TISSUE SPECIFICITY.
RX AGRICOLA=IND23308168; DOI=10.1007/s00497-002-0151-7;
RA Pelucchi A., Fornara F., Favalli C., Masiero S., Lago C., Pe M.E.,
RA Colombo L., Kater M.M.;
RT "Comparative analysis of rice MADS-box genes expresseed during flower
RT development.";
RL Sex. Plant Reprod. 15:113-122(2002).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower).
CC {ECO:0000269|Ref.7}.
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DR EMBL; AB003326; BAA81884.1; -; mRNA.
DR EMBL; AY551925; AAS59831.1; -; mRNA.
DR EMBL; AP004566; BAD09511.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF22747.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT03519.1; -; Genomic_DNA.
DR EMBL; AK069122; BAG91267.1; -; mRNA.
DR RefSeq; XP_015650791.1; XM_015795305.1.
DR AlphaFoldDB; Q0J8G8; -.
DR SMR; Q0J8G8; -.
DR STRING; 4530.OS08T0112700-01; -.
DR PaxDb; Q0J8G8; -.
DR PRIDE; Q0J8G8; -.
DR EnsemblPlants; Os08t0112700-01; Os08t0112700-01; Os08g0112700.
DR GeneID; 4344493; -.
DR Gramene; Os08t0112700-01; Os08t0112700-01; Os08g0112700.
DR KEGG; osa:4344493; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_3_1; -.
DR InParanoid; Q0J8G8; -.
DR OMA; WIYHVRS; -.
DR OrthoDB; 1252066at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q0J8G8; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..222
FT /note="MADS-box transcription factor 26"
FT /id="PRO_0000229907"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 85..176
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
SQ SEQUENCE 222 AA; 25217 MW; CEBFC35A44D77D79 CRC64;
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT
GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRYIY GNRANEHMTV
EELNALERYL EIWMYNIRSA KMQIMIQEIQ ALKSKEGMLK AANEILQEKI VEQNGLIDVG
MMVADQQNGH FSTVPLLEEI TNPLTILSGY STCRGSEMGY SF
