ID   MAD29_ORYSJ             Reviewed;         260 AA.
AC   Q6H711; Q0E3J6; Q84NC3;
DT   04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT   19-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 98.
DE   RecName: Full=MADS-box transcription factor 29;
DE   AltName: Full=OsMADS29;
GN   Name=MADS29; OrderedLocusNames=Os02g0170300, LOC_Os02g07430;
GN   ORFNames=OJ1116_A06.26, OsJ_05554 {ECO:0000312|EMBL:EEE56400.1},
GN   P0030G02.16;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 10-65, AND TISSUE SPECIFICITY.
RC   STRAIN=cv. Dongjin;
RX   PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA   Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA   Lee J., Lee D.-Y., Kang H.-G., An G.;
RT   "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT   functional genomic analyses: MADS-box genes as a test case.";
RL   Plant Cell Physiol. 44:1403-1411(2003).
CC   -!- FUNCTION: Probable transcription factor.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- TISSUE SPECIFICITY: Expressed in developing seeds.
CC       {ECO:0000269|PubMed:14701936}.
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DR   EMBL; AP004113; BAD25186.1; -; Genomic_DNA.
DR   EMBL; AP004836; BAD25488.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF07942.1; -; Genomic_DNA.
DR   EMBL; AP014958; BAS77197.1; -; Genomic_DNA.
DR   EMBL; CM000139; EEE56400.1; -; Genomic_DNA.
DR   EMBL; AK109522; BAG98787.1; -; mRNA.
DR   EMBL; AY177697; AAO47707.1; -; mRNA.
DR   RefSeq; XP_015624837.1; XM_015769351.1.
DR   AlphaFoldDB; Q6H711; -.
DR   SMR; Q6H711; -.
DR   STRING; 4530.OS02T0170300-01; -.
DR   PaxDb; Q6H711; -.
DR   PRIDE; Q6H711; -.
DR   EnsemblPlants; Os02t0170300-01; Os02t0170300-01; Os02g0170300.
DR   GeneID; 4328443; -.
DR   Gramene; Os02t0170300-01; Os02t0170300-01; Os02g0170300.
DR   KEGG; osa:4328443; -.
DR   eggNOG; KOG0014; Eukaryota.
DR   HOGENOM; CLU_053053_0_1_1; -.
DR   InParanoid; Q6H711; -.
DR   OMA; EQYQHAT; -.
DR   OrthoDB; 1436985at2759; -.
DR   PlantReactome; R-OSA-9623513; Maternal tissue PCD.
DR   Proteomes; UP000000763; Chromosome 2.
DR   Proteomes; UP000007752; Chromosome 2.
DR   Proteomes; UP000059680; Chromosome 2.
DR   Genevisible; Q6H711; OS.
DR   GO; GO:0005634; C:nucleus; IDA:CACAO.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0043068; P:positive regulation of programmed cell death; IMP:CACAO.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   GO; GO:0048316; P:seed development; IMP:CACAO.
DR   GO; GO:0019252; P:starch biosynthetic process; IMP:CACAO.
DR   CDD; cd00265; MADS_MEF2_like; 1.
DR   Gene3D; 3.40.1810.10; -; 1.
DR   InterPro; IPR033896; MADS_MEF2-like.
DR   InterPro; IPR002487; TF_Kbox.
DR   InterPro; IPR002100; TF_MADSbox.
DR   InterPro; IPR036879; TF_MADSbox_sf.
DR   Pfam; PF01486; K-box; 1.
DR   Pfam; PF00319; SRF-TF; 1.
DR   PRINTS; PR00404; MADSDOMAIN.
DR   SMART; SM00432; MADS; 1.
DR   SUPFAM; SSF55455; SSF55455; 1.
DR   PROSITE; PS51297; K_BOX; 1.
DR   PROSITE; PS00350; MADS_BOX_1; 1.
DR   PROSITE; PS50066; MADS_BOX_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..260
FT                   /note="MADS-box transcription factor 29"
FT                   /id="PRO_0000229909"
FT   DOMAIN          1..61
FT                   /note="MADS-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT   DOMAIN          85..175
FT                   /note="K-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
SQ   SEQUENCE   260 AA;  28994 MW;  C26163AD12175E8E CRC64;
     MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP
     TCSLRELIEH YQTVTNTHFE EINHDQQIFV EMTRMRNEME KLDGGIRRFT GDDLSNLTLA
     DINDLEQQLE FSVTKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMIN ENHHQAAVGG
     GDVKAMVEMA PVLSMLTAAP AYYGEESSST ALQLTPPLHA VDAAAAAGFR LQPTQPNLQD
     PGCSSSSFHA AAAGHGLQLW