MAD30_ORYSJ
ID MAD30_ORYSJ Reviewed; 221 AA.
AC Q655V4; Q84ND1;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=MADS-box transcription factor 30;
DE AltName: Full=OsMADS30;
GN Name=MADS30; OrderedLocusNames=Os06g0667200, LOC_Os06g45650;
GN ORFNames=P0637D03.37;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin;
RX PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA Lee J., Lee D.-Y., Kang H.-G., An G.;
RT "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT functional genomic analyses: MADS-box genes as a test case.";
RL Plant Cell Physiol. 44:1403-1411(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Probable transcription factor.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
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DR EMBL; AY174093; AAO39706.1; -; mRNA.
DR EMBL; AP003633; BAD45413.1; -; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015644347.1; XM_015788861.1.
DR AlphaFoldDB; Q655V4; -.
DR SMR; Q655V4; -.
DR STRING; 4530.OS06T0667200-00; -.
DR PaxDb; Q655V4; -.
DR PRIDE; Q655V4; -.
DR EnsemblPlants; Os06t0667200-01; Os06t0667200-01; Os06g0667200.
DR Gramene; Os06t0667200-01; Os06t0667200-01; Os06g0667200.
DR KEGG; osa:4341786; -.
DR eggNOG; KOG0014; Eukaryota.
DR InParanoid; Q655V4; -.
DR OrthoDB; 1609924at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q655V4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..221
FT /note="MADS-box transcription factor 30"
FT /id="PRO_0000229910"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 87..178
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT CONFLICT 3
FT /note="Q -> R (in Ref. 1; AAO39706)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 221 AA; 25781 MW; D78408074A9B3993 CRC64;
MGQGKIEMKR IEDATRRQVT FSKRRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP
PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE IDQLEASLRR QTGEDLSSVS
TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMHQT VHEQNNFLCR MVTKILLLNV
ITIMILAAMI SITHARIALD DCMQLGYIVI KQENSWRFWF I