ID   MAD34_ORYSJ             Reviewed;         239 AA.
AC   Q6Q9H6; A0A0P0W370; Q10CQ0; Q6Q9I5; Q9XJ64;
DT   04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT   04-APR-2006, sequence version 2.
DT   03-AUG-2022, entry version 108.
DE   RecName: Full=MADS-box transcription factor 34;
DE   AltName: Full=OsMADS34;
DE   AltName: Full=RMADS212/RMADS217/RMADS221;
GN   Name=MADS34;
GN   OrderedLocusNames=Os03g0753100 {ECO:0000312|EMBL:BAF13215.1},
GN   LOC_Os03g54170 {ECO:0000312|EMBL:ABF98926.1};
GN   ORFNames=OJ1112_G08.14, OSJNBa0032E21.03, OSJNBa0047E24.1;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Nipponbare; TISSUE=Panicle;
RX   PubMed=10382970; DOI=10.1093/dnares/6.2.123;
RA   Shinozuka Y., Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K.,
RA   Sasaki T.;
RT   "Isolation and characterization of rice MADS box gene homologues and their
RT   RFLP mapping.";
RL   DNA Res. 6:123-129(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RA   Yao Q., Peng R., Xiong A.;
RL   Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [6]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [7]
RP   TISSUE SPECIFICITY.
RX   AGRICOLA=IND23308168; DOI=10.1007/s00497-002-0151-7;
RA   Pelucchi A., Fornara F., Favalli C., Masiero S., Lago C., Pe M.E.,
RA   Colombo L., Kater M.M.;
RT   "Comparative analysis of rice MADS-box genes expresseed during flower
RT   development.";
RL   Sex. Plant Reprod. 15:113-122(2002).
CC   -!- FUNCTION: Probable transcription factor.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- TISSUE SPECIFICITY: Highly expressed in leaves and at low levels in
CC       roots and spikelets (rice flower). {ECO:0000269|Ref.7}.
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DR   EMBL; AB003324; BAA81882.1; -; mRNA.
DR   EMBL; AY551917; AAS59823.1; -; mRNA.
DR   EMBL; AY551922; AAS59828.1; -; mRNA.
DR   EMBL; AY551926; AAS59832.1; -; mRNA.
DR   EMBL; AC092556; AAR87238.1; -; Genomic_DNA.
DR   EMBL; AC135225; AAP68366.1; -; Genomic_DNA.
DR   EMBL; AF377947; AAM34397.1; -; Genomic_DNA.
DR   EMBL; DP000009; ABF98926.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF13215.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS86430.1; -; Genomic_DNA.
DR   RefSeq; XP_015631035.1; XM_015775549.1.
DR   AlphaFoldDB; Q6Q9H6; -.
DR   SMR; Q6Q9H6; -.
DR   STRING; 4530.OS03T0753100-01; -.
DR   PaxDb; Q6Q9H6; -.
DR   PRIDE; Q6Q9H6; -.
DR   EnsemblPlants; Os03t0753100-01; Os03t0753100-01; Os03g0753100.
DR   GeneID; 4334141; -.
DR   Gramene; Os03t0753100-01; Os03t0753100-01; Os03g0753100.
DR   KEGG; osa:4334141; -.
DR   eggNOG; KOG0014; Eukaryota.
DR   HOGENOM; CLU_053053_0_2_1; -.
DR   InParanoid; Q6Q9H6; -.
DR   OMA; PQLPWQG; -.
DR   OrthoDB; 1247594at2759; -.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 3.
DR   Genevisible; Q6Q9H6; OS.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00265; MADS_MEF2_like; 1.
DR   Gene3D; 3.40.1810.10; -; 1.
DR   InterPro; IPR033896; MADS_MEF2-like.
DR   InterPro; IPR002487; TF_Kbox.
DR   InterPro; IPR002100; TF_MADSbox.
DR   InterPro; IPR036879; TF_MADSbox_sf.
DR   Pfam; PF01486; K-box; 1.
DR   Pfam; PF00319; SRF-TF; 1.
DR   PRINTS; PR00404; MADSDOMAIN.
DR   SMART; SM00432; MADS; 1.
DR   SUPFAM; SSF55455; SSF55455; 1.
DR   PROSITE; PS51297; K_BOX; 1.
DR   PROSITE; PS00350; MADS_BOX_1; 1.
DR   PROSITE; PS50066; MADS_BOX_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..239
FT                   /note="MADS-box transcription factor 34"
FT                   /id="PRO_0000229914"
FT   DOMAIN          1..61
FT                   /note="MADS-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT   DOMAIN          88..178
FT                   /note="K-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT   REGION          179..208
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        1
FT                   /note="M -> MM (in Ref. 2; AAS59823)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        171..172
FT                   /note="KL -> I (in Ref. 2; AAS59832)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   239 AA;  26881 MW;  D8D4E0EDEE173CA3 CRC64;
     MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS
     SNMLKTLERY QRYIYASQDA AAPTSDEMQN NYQEYVNLKA HVEILQQSQR NLLGEDLAPL
     ATNELEQLES QVVRTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEIDVEAA
     PPQPPWNGNC SNGHGGGGGV FSSEPPQPEH FFQALGLHAV DVNQPPAPPP GGYPPEWMA