MAD47_ORYSJ
ID MAD47_ORYSJ Reviewed; 250 AA.
AC Q5K4R0; Q10QR6; Q10QR7; Q6VAM2; Q6VAM3; Q9AVU1;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 18-SEP-2019, sequence version 3.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=MADS-box transcription factor 47 {ECO:0000305};
DE AltName: Full=MADS-domain-containing protein 1 {ECO:0000303|PubMed:16827922};
DE Short=OsMDP1 {ECO:0000303|PubMed:16827922};
DE AltName: Full=OsMADS47 {ECO:0000303|PubMed:14701936};
GN Name=MADS47 {ECO:0000303|PubMed:14701936};
GN Synonyms=MDP1 {ECO:0000303|PubMed:16827922};
GN OrderedLocusNames=Os03g0186600 {ECO:0000312|EMBL:BAS82679.1},
GN LOC_Os03g08754 {ECO:0000312|EMBL:ABF94360.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
RX PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA Lee J., Lee D.-Y., Kang H.-G., An G.;
RT "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT functional genomic analyses: MADS-box genes as a test case.";
RL Plant Cell Physiol. 44:1403-1411(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
RA Duan K.;
RT "Microarray-isolated new MADS gene from rice.";
RL Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 12-246 (ISOFORM 2).
RC TISSUE=Leaf;
RA Masiero S., Pelucchi N., Byzova M., Sari-Gorla M., Kater M.M., Colombo L.;
RT "OsMADS18, a rice MADS box gene that changes partner during plant
RT development, promotes flowering.";
RL Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases.
RN [9]
RP INTERACTION WITH MADS18.
RX PubMed=15299121; DOI=10.1104/pp.104.045039;
RA Fornara F., Parenicova L., Falasca G., Pelucchi N., Masiero S.,
RA Ciannamea S., Lopez-Dee Z.P., Altamura M.M., Colombo L., Kater M.M.;
RT "Functional characterization of OsMADS18, a member of the AP1/SQUA
RT subfamily of MADS box genes.";
RL Plant Physiol. 135:2207-2219(2004).
RN [10]
RP TISSUE SPECIFICITY.
RX PubMed=15682279; DOI=10.1007/s00438-004-1093-6;
RA Sentoku N., Kato H., Kitano H., Imai R.;
RT "OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-
RT vegetative tissues and its ectopic expression induces spikelet meristem
RT indeterminacy.";
RL Mol. Genet. Genomics 273:1-9(2005).
RN [11]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=16827922; DOI=10.1111/j.1365-313x.2006.02804.x;
RA Duan K., Li L., Hu P., Xu S.P., Xu Z.H., Xue H.W.;
RT "A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has
RT a negative regulatory role in BR signaling.";
RL Plant J. 47:519-531(2006).
CC -!- FUNCTION: Transcription factor that modulates expressions of multiple
CC genes involved in cell signaling and gene transcription
CC (PubMed:16827922). Plays a negative regulatory role in brassinosteroid
CC signaling (PubMed:16827922). {ECO:0000269|PubMed:16827922}.
CC -!- SUBUNIT: May interact with MADS18.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1; Synonyms=MADS47-1;
CC IsoId=Q5K4R0-1; Sequence=Displayed;
CC Name=2; Synonyms=MADS47-2;
CC IsoId=Q5K4R0-2; Sequence=VSP_017786;
CC -!- TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles
CC (PubMed:15682279, PubMed:16827922). Expressed in mature stems and
CC leaves, flowering panicles, developing seeds, and mature seeds
CC (PubMed:16827922). {ECO:0000269|PubMed:15682279,
CC ECO:0000269|PubMed:16827922}.
CC -!- INDUCTION: Induced by dark (PubMed:16827922). Down-regulated by
CC treatments with auxin and brassinosteroid (PubMed:16827922).
CC {ECO:0000269|PubMed:16827922}.
CC -!- MISCELLANEOUS: Plants silencing MADS47 exhibit shortened primary roots,
CC elongated coleoptiles and enhanced lamina joint inclinations
CC (PubMed:16827922). Plants silencing MADS47 display hypersensitivity to
CC exogenous brassinolide in terms of lamina joint inclination and
CC coleoptile elongation (PubMed:16827922). {ECO:0000269|PubMed:16827922}.
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAQ23142.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAQ23143.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=CAC29335.1; Type=Frameshift; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AY345221; AAQ23142.1; ALT_FRAME; mRNA.
DR EMBL; AY345222; AAQ23143.1; ALT_FRAME; mRNA.
DR EMBL; AJ536158; CAD60176.1; -; mRNA.
DR EMBL; DP000009; ABF94360.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF94361.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11117.2; -; Genomic_DNA.
DR EMBL; AP014959; BAS82679.1; -; Genomic_DNA.
DR EMBL; AK242211; BAH01226.1; -; mRNA.
DR EMBL; AJ293816; CAC29335.1; ALT_FRAME; mRNA.
DR RefSeq; XP_015630610.1; XM_015775124.1. [Q5K4R0-1]
DR RefSeq; XP_015630611.1; XM_015775125.1. [Q5K4R0-2]
DR AlphaFoldDB; Q5K4R0; -.
DR SMR; Q5K4R0; -.
DR IntAct; Q5K4R0; 3.
DR STRING; 4530.OS03T0186600-01; -.
DR PaxDb; Q5K4R0; -.
DR PRIDE; Q5K4R0; -.
DR EnsemblPlants; Os03t0186600-01; Os03t0186600-01; Os03g0186600. [Q5K4R0-2]
DR GeneID; 4331872; -.
DR Gramene; Os03t0186600-01; Os03t0186600-01; Os03g0186600. [Q5K4R0-2]
DR KEGG; osa:4331872; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_14_1_1; -.
DR InParanoid; Q5K4R0; -.
DR OMA; QIYNNVH; -.
DR OrthoDB; 1301596at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q5K4R0; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:Gramene.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009742; P:brassinosteroid mediated signaling pathway; IMP:Gramene.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..250
FT /note="MADS-box transcription factor 47"
FT /id="PRO_0000229915"
FT DOMAIN 20..80
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 106..198
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 196..250
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 212..250
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 190..191
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14701936, ECO:0000303|Ref.2,
FT ECO:0000303|Ref.7, ECO:0000303|Ref.8"
FT /id="VSP_017786"
FT CONFLICT 241
FT /note="R -> K (in Ref. 1; AAQ23142/AAQ23143 and 8;
FT CAC29335)"
SQ SEQUENCE 250 AA; 27910 MW; A936196DA7D46088 CRC64;
MAGGGGGGGR GEGEGRAATG KRERIAIRRI DNLAARQVTF SKRRRGLFKK AEELSILCDA
EVGLVVFSAT GKLFQFASTS MEQIIDRYNS HSKTLQRAEP SQLDLQGEDS STCARLKEEL
AETSLRLRQM RGEELHRLNV EQLQELEKSL ESGLGSVLKT KSKKILDEID GLERKRMQLI
EENLRLKEQL QVSRMSRMEE MQPGPDSEIV YEEGQSSESV TNASYPRPPP DNDYSSDTSL
RLGLSLFSSK
