MAD51_ORYSJ
ID MAD51_ORYSJ Reviewed; 164 AA.
AC Q9XJ61;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 03-AUG-2022, entry version 143.
DE RecName: Full=MADS-box transcription factor 51 {ECO:0000305};
DE Short=OsMADS51 {ECO:0000303|PubMed:17951465};
DE AltName: Full=OsMADS65 {ECO:0000305};
GN Name=MADS51 {ECO:0000303|PubMed:17951465};
GN OrderedLocusNames=Os01g0922800 {ECO:0000312|EMBL:BAF07149.1},
GN LOC_Os01g69850 {ECO:0000305};
GN ORFNames=B1455F06.16 {ECO:0000312|EMBL:BAD88318.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Nipponbare; TISSUE=Shoot;
RX PubMed=10382970; DOI=10.1093/dnares/6.2.123;
RA Shinozuka Y., Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K.,
RA Sasaki T.;
RT "Isolation and characterization of rice MADS box gene homologues and their
RT RFLP mapping.";
RL DNA Res. 6:123-129(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=17951465; DOI=10.1104/pp.107.103291;
RA Kim S.L., Lee S., Kim H.J., Nam H.G., An G.;
RT "OsMADS51 is a short-day flowering promoter that functions upstream of
RT Ehd1, OsMADS14, and Hd3a.";
RL Plant Physiol. 145:1484-1494(2007).
CC -!- FUNCTION: Probable transcription factor involved in the regulation of
CC flowering time under short day (SD) conditions. Functions as promoter
CC of flowering under SD conditions, upstream of EHD1, HD3A and MADS14,
CC but downstream of GIGANTEA (GI). May transmit a SD promotion signal
CC from GI to EHD1. Functions independently of MADS50 to control flowering
CC time. {ECO:0000269|PubMed:17951465}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00251}.
CC -!- TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10382970}.
CC -!- DISRUPTION PHENOTYPE: Late flowering under short day (SD) conditions.
CC {ECO:0000269|PubMed:17951465}.
CC -!- MISCELLANEOUS: Plant over-expressing MADS50 have an early flowering
CC phenotype under short day (SD) conditions.
CC {ECO:0000269|PubMed:17951465}.
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DR EMBL; AB003327; BAA81885.1; -; mRNA.
DR EMBL; AP006167; BAD88318.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF07149.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75953.1; -; Genomic_DNA.
DR EMBL; AK066160; BAG89847.1; -; mRNA.
DR AlphaFoldDB; Q9XJ61; -.
DR SMR; Q9XJ61; -.
DR STRING; 4530.OS01T0922800-01; -.
DR PaxDb; Q9XJ61; -.
DR PRIDE; Q9XJ61; -.
DR EnsemblPlants; Os01t0922800-01; Os01t0922800-01; Os01g0922800.
DR Gramene; Os01t0922800-01; Os01t0922800-01; Os01g0922800.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_4_1; -.
DR InParanoid; Q9XJ61; -.
DR OMA; ITAWSLQ; -.
DR PlantReactome; R-OSA-8934108; Short day regulated expression of florigens.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0048576; P:positive regulation of short-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..164
FT /note="MADS-box transcription factor 51"
FT /id="PRO_0000437439"
FT DOMAIN 2..62
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT REGION 133..164
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 144..164
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 164 AA; 18363 MW; 057C981BA7B0F129 CRC64;
MARRGRVQLR RIEDKASRQV RFSKRRAGLF KKAFELALLC DVEVALLVFS PVGKLYEYSS
SSIEGTYDRY QQFAGARRDL NEGSTSINSD ENASIHSRLR DITAWSLQNN ADESDANQLE
KLEKLLTNAL RDTKSKKMLA KQNGEGSRSR ANSSGSRGQE EGSA
