MAD55_ORYSJ
ID MAD55_ORYSJ Reviewed; 245 AA.
AC Q69TG5; Q0DDL0; Q6VAM1;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 04-APR-2006, sequence version 2.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=MADS-box transcription factor 55;
DE AltName: Full=OsMADS55;
GN Name=MADS55; OrderedLocusNames=Os06g0217300, LOC_Os06g11330;
GN ORFNames=OSJNBb0024N18.23;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin;
RX PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA Lee J., Lee D.-Y., Kang H.-G., An G.;
RT "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT functional genomic analyses: MADS-box genes as a test case.";
RL Plant Cell Physiol. 44:1403-1411(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP TISSUE SPECIFICITY.
RX PubMed=15682279; DOI=10.1007/s00438-004-1093-6;
RA Sentoku N., Kato H., Kitano H., Imai R.;
RT "OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-
RT vegetative tissues and its ectopic expression induces spikelet meristem
RT indeterminacy.";
RL Mol. Genet. Genomics 273:1-9(2005).
RN [7]
RP FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=18182025; DOI=10.1111/j.1365-313x.2008.03406.x;
RA Lee S., Choi S.C., An G.;
RT "Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative
RT regulators of brassinosteroid responses.";
RL Plant J. 54:93-105(2008).
CC -!- FUNCTION: Transcription factor that acts as negative regulator of
CC brassinosteroid signaling. {ECO:0000269|PubMed:18182025}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q69TG5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q69TG5-2; Sequence=VSP_017789;
CC -!- TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles
CC (PubMed:14701936, PubMed:15682279). Expressed in shoots
CC (PubMed:18182025). {ECO:0000269|PubMed:14701936,
CC ECO:0000269|PubMed:15682279, ECO:0000269|PubMed:18182025}.
CC -!- MISCELLANEOUS: Plants silencing MADS55 exhibit a reduction in the
CC number of elongated internodes and an increase in lamina joint
CC inclination (PubMed:18182025). Plants over-expressing MADS55 exhibit
CC low fertility, abnormal florets, shortened panicles and elongated stems
CC (PubMed:18182025). {ECO:0000269|PubMed:18182025}.
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DR EMBL; AY345223; AAQ23144.2; -; mRNA.
DR EMBL; AP004741; BAD35842.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF19063.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96796.1; -; Genomic_DNA.
DR EMBL; AK111859; BAG99448.1; -; mRNA.
DR RefSeq; XP_015641679.1; XM_015786193.1. [Q69TG5-2]
DR AlphaFoldDB; Q69TG5; -.
DR SMR; Q69TG5; -.
DR STRING; 4530.OS06T0217300-01; -.
DR PRIDE; Q69TG5; -.
DR EnsemblPlants; Os06t0217300-01; Os06t0217300-01; Os06g0217300. [Q69TG5-2]
DR GeneID; 4340495; -.
DR Gramene; Os06t0217300-01; Os06t0217300-01; Os06g0217300. [Q69TG5-2]
DR KEGG; osa:4340495; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_14_1_1; -.
DR InParanoid; Q69TG5; -.
DR OMA; NLEHSKC; -.
DR OrthoDB; 1301596at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q69TG5; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:1900458; P:negative regulation of brassinosteroid mediated signaling pathway; IMP:UniProtKB.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..245
FT /note="MADS-box transcription factor 55"
FT /id="PRO_0000229917"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 109..199
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 197..245
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 209..236
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 89..110
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_017789"
SQ SEQUENCE 245 AA; 27543 MW; 6B6E306CDAD37CD0 CRC64;
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS
NMNEIIDKYT THSKNLGKTD KQPSIDLNFF LIILLRTYTN SYAYIHLLLQ LEHSKCSSLN
EQLAEASLQL RQMRGEELEG LSVEELQQME KNLEAGLQRV LCTKDQQFMQ EISELQRKGI
QLAEENMRLR DQMPQVPTAG LAVPDTENVL TEDGQSSESV MTALNSGSSQ DNDDGSDISL
KLGLP
