MAD57_ORYSJ
ID MAD57_ORYSJ Reviewed; 241 AA.
AC Q6Z6W2; Q0DXV6; Q84NB9; Q84P85;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 04-APR-2006, sequence version 2.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=MADS-box transcription factor 57 {ECO:0000305};
DE AltName: Full=OsMADS57 {ECO:0000303|PubMed:14701936};
GN Name=MADS57 {ECO:0000303|PubMed:14701936};
GN OrderedLocusNames=Os02g0731200 {ECO:0000312|EMBL:BAS80753.1},
GN LOC_Os02g49840 {ECO:0000305};
GN ORFNames=OsJ_08264 {ECO:0000312|EMBL:EEE57746.1},
GN P0617A09.25 {ECO:0000312|EMBL:BAD15933.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin;
RX PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA Lee J., Lee D.-Y., Kang H.-G., An G.;
RT "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT functional genomic analyses: MADS-box genes as a test case.";
RL Plant Cell Physiol. 44:1403-1411(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12684538; DOI=10.1073/pnas.0737574100;
RA Cooper B., Clarke J.D., Budworth P., Kreps J., Hutchison D., Park S.,
RA Guimil S., Dunn M., Luginbuehl P., Ellero C., Goff S.A., Glazebrook J.;
RT "A network of rice genes associated with stress response and seed
RT development.";
RL Proc. Natl. Acad. Sci. U.S.A. 100:4945-4950(2003).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP FUNCTION, INTERACTION WITH TB1, SUBCELLULAR LOCATION, TISSUE SPECIFICITY,
RP AND DISRUPTION PHENOTYPE.
RX PubMed=23463009; DOI=10.1038/ncomms2542;
RA Guo S., Xu Y., Liu H., Mao Z., Zhang C., Ma Y., Zhang Q., Meng Z.,
RA Chong K.;
RT "The interaction between OsMADS57 and OsTB1 modulates rice tillering via
RT DWARF14.";
RL Nat. Commun. 4:1566-1566(2013).
CC -!- FUNCTION: Transcriptional factor that targets the CArG motif 5'-
CC C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14
CC expression to control the outgrowth of axillary buds.
CC {ECO:0000269|PubMed:23463009}.
CC -!- SUBUNIT: Interacts with TB1. {ECO:0000269|PubMed:23463009}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:23463009}.
CC -!- TISSUE SPECIFICITY: Expressed in seedling roots and shoots
CC (PubMed:14701936). Highly expressed in young leaves (PubMed:23463009).
CC {ECO:0000269|PubMed:14701936, ECO:0000269|PubMed:23463009}.
CC -!- DISRUPTION PHENOTYPE: Increased number of tillers.
CC {ECO:0000269|PubMed:23463009}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD15933.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY177702; AAO47712.1; -; mRNA.
DR EMBL; AY224482; AAO72601.1; -; mRNA.
DR EMBL; AP004888; BAD15933.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008208; BAF09932.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80753.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE57746.1; -; Genomic_DNA.
DR EMBL; AK241644; BAH01078.1; -; mRNA.
DR RefSeq; XP_015626795.1; XM_015771309.1.
DR AlphaFoldDB; Q6Z6W2; -.
DR SMR; Q6Z6W2; -.
DR IntAct; Q6Z6W2; 1.
DR STRING; 4530.OS02T0731200-01; -.
DR PaxDb; Q6Z6W2; -.
DR PRIDE; Q6Z6W2; -.
DR EnsemblPlants; Os02t0731200-01; Os02t0731200-01; Os02g0731200.
DR GeneID; 4330621; -.
DR Gramene; Os02t0731200-01; Os02t0731200-01; Os02g0731200.
DR KEGG; osa:4330621; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_2_0_1; -.
DR InParanoid; Q6Z6W2; -.
DR OMA; MNANSEA; -.
DR OrthoDB; 1227337at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6Z6W2; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Growth regulation; Nucleus; Reference proteome; Repressor;
KW Transcription; Transcription regulation.
FT CHAIN 1..241
FT /note="MADS-box transcription factor 57"
FT /id="PRO_0000229919"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 85..178
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT REGION 216..241
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 241 AA; 27236 MW; 3CB43D0DFF5D6AB3 CRC64;
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST
NMKTVIDRYT NAKEELLGGN ATSEIKIWQR EAASLRQQLH NLQESHKQLM GEELSGLGVR
DLQGLENRLE ISLRNIRMRK DNLLKSEIEE LHVKGSLIHQ ENIELSRSLN VMSQQKLELY
NKLQACEQRG ATDANESSST PYSFRIIQNA NMPPSLELSQ SQQREGECSK TAAPELGLHL
P
