ID   MAD58_ORYSJ             Reviewed;         272 AA.
AC   Q2V0P1; Q6ATK6;
DT   04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT   24-JAN-2006, sequence version 1.
DT   03-AUG-2022, entry version 98.
DE   RecName: Full=MADS-box transcription factor 58;
DE   AltName: Full=OsMADS58;
GN   Name=MADS58; OrderedLocusNames=Os05g0203800, LOC_Os05g11414;
GN   ORFNames=OSJNBa0015G13.8;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, DEVELOPMENTAL STAGE, AND
RP   DISRUPTION PHENOTYPE.
RX   PubMed=16326928; DOI=10.1105/tpc.105.037200;
RA   Yamaguchi T., Lee D.-Y., Miyao A., Hirochika H., An G., Hirano H.;
RT   "Functional diversification of the two C-class MADS box genes OSMADS3 and
RT   OSMADS58 in Oryza sativa.";
RL   Plant Cell 18:15-28(2006).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA   Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Probable transcription factor involved in the development of
CC       floral organs. Acts as a C-class protein in association with MADS3.
CC       Involved in the control of lodicule number (whorl 2), stamen
CC       specification (whorl 3), floral meristem determinacy and regulation of
CC       the carpel morphogenesis (whorl 4). Plays a more predominant role in
CC       floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q2V0P1-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q2V0P1-2; Sequence=VSP_017790;
CC   -!- TISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule
CC       primordia.
CC   -!- DEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and
CC       ovules during their development. {ECO:0000269|PubMed:16326928}.
CC   -!- DISRUPTION PHENOTYPE: Abnormal flowers with floral-like organs.
CC       {ECO:0000269|PubMed:16326928}.
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DR   EMBL; AB232157; BAE54300.1; -; mRNA.
DR   EMBL; AC135920; AAT85114.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS92735.1; -; Genomic_DNA.
DR   EMBL; AK111723; -; NOT_ANNOTATED_CDS; mRNA.
DR   AlphaFoldDB; Q2V0P1; -.
DR   SMR; Q2V0P1; -.
DR   STRING; 4530.OS05T0203800-01; -.
DR   PaxDb; Q2V0P1; -.
DR   PRIDE; Q2V0P1; -.
DR   EnsemblPlants; Os05t0203800-01; Os05t0203800-01; Os05g0203800. [Q2V0P1-2]
DR   EnsemblPlants; Os05t0203800-02; Os05t0203800-02; Os05g0203800. [Q2V0P1-1]
DR   Gramene; Os05t0203800-01; Os05t0203800-01; Os05g0203800. [Q2V0P1-2]
DR   Gramene; Os05t0203800-02; Os05t0203800-02; Os05g0203800. [Q2V0P1-1]
DR   eggNOG; KOG0014; Eukaryota.
DR   InParanoid; Q2V0P1; -.
DR   OMA; SEINAQH; -.
DR   PlantReactome; R-OSA-9609102; Flower development.
DR   Proteomes; UP000000763; Chromosome 5.
DR   Proteomes; UP000059680; Chromosome 5.
DR   ExpressionAtlas; Q2V0P1; baseline and differential.
DR   Genevisible; Q2V0P1; OS.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0048440; P:carpel development; TAS:AgBase.
DR   GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR   GO; GO:0010582; P:floral meristem determinacy; TAS:AgBase.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00265; MADS_MEF2_like; 1.
DR   Gene3D; 3.40.1810.10; -; 1.
DR   InterPro; IPR033896; MADS_MEF2-like.
DR   InterPro; IPR002487; TF_Kbox.
DR   InterPro; IPR002100; TF_MADSbox.
DR   InterPro; IPR036879; TF_MADSbox_sf.
DR   Pfam; PF01486; K-box; 1.
DR   Pfam; PF00319; SRF-TF; 1.
DR   PRINTS; PR00404; MADSDOMAIN.
DR   SMART; SM00432; MADS; 1.
DR   SUPFAM; SSF55455; SSF55455; 1.
DR   PROSITE; PS51297; K_BOX; 1.
DR   PROSITE; PS00350; MADS_BOX_1; 1.
DR   PROSITE; PS50066; MADS_BOX_2; 1.
PE   2: Evidence at transcript level;
KW   Activator; Alternative splicing; Developmental protein; Differentiation;
KW   DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..272
FT                   /note="MADS-box transcription factor 58"
FT                   /id="PRO_0000229920"
FT   DOMAIN          43..103
FT                   /note="MADS-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT   DOMAIN          129..219
FT                   /note="K-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT   REGION          1..41
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   VAR_SEQ         234..272
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:12869764"
FT                   /id="VSP_017790"
SQ   SEQUENCE   272 AA;  30831 MW;  1C01DE819F1417C1 CRC64;
     MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ
     VTFCKRRSGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVKETIER YKKANSDTSN
     ASTVAEINAQ HYQQEAAKLK QQITNLQNSN RTLVGDNITT MNHRELKQLE GRLDKGLGKI
     RARKNELLCA EIEYMQRRET ELQNDNMYLK SKVAESERGL QTVNMMGSAS TSEYVQNMIH
     YDPRNFLQFN IMHQPQYYPE QEDRKAFMSD ER