MADS1_VITVI
ID MADS1_VITVI Reviewed; 225 AA.
AC Q93XH4; F6HP00;
DT 05-JUN-2019, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Agamous-like MADS-box protein MADS1 {ECO:0000305};
DE AltName: Full=Agamous homolog 1 {ECO:0000305};
DE Short=VvAG1 {ECO:0000303|PubMed:18997115};
DE Short=VviAG1 {ECO:0000303|PubMed:26818751};
DE AltName: Full=MADS-box protein 1 {ECO:0000303|PubMed:11414613};
DE Short=Vvmads1 {ECO:0000303|PubMed:11414613};
GN Name=MADS1 {ECO:0000303|PubMed:11414613};
GN OrderedLocusNames=VIT_12s0142g00360 {ECO:0000312|EMBL:CCB56406.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Shiraz; TISSUE=Flower;
RX PubMed=11414613; DOI=10.1023/a:1010634132156;
RA Boss P.K., Vivier M., Matsumoto S., Dry I.B., Thomas M.R.;
RT "A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS
RT and SHATTERPROOF, is not only expressed in flowers but also throughout
RT berry development.";
RL Plant Mol. Biol. 45:541-553(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024;
RX PubMed=17721507; DOI=10.1038/nature06148;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
RN [3]
RP GENE FAMILY.
RX PubMed=18997115; DOI=10.1104/pp.108.131052;
RA Diaz-Riquelme J., Lijavetzky D., Martinez-Zapater J.M., Carmona M.J.;
RT "Genome-wide analysis of MIKCC-type MADS box genes in grapevine.";
RL Plant Physiol. 149:354-369(2009).
RN [4]
RP GENE FAMILY.
RX PubMed=26818751; DOI=10.1186/s12864-016-2398-7;
RA Grimplet J., Martinez-Zapater J.M., Carmona M.J.;
RT "Structural and functional annotation of the MADS-box transcription factor
RT family in grapevine.";
RL BMC Genomics 17:80-80(2016).
CC -!- FUNCTION: Probable transcription factor involved in flower development.
CC {ECO:0000250|UniProtKB:Q0HA25}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00251}.
CC -!- TISSUE SPECIFICITY: Expressed in flowers and seeds.
CC {ECO:0000269|PubMed:11414613}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CCB56406.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF265562; AAK58564.1; -; mRNA.
DR EMBL; FN595999; CCB56406.1; ALT_SEQ; Genomic_DNA.
DR EMBL; FN597034; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; NP_001268105.1; NM_001281176.1.
DR RefSeq; XP_010656929.1; XM_010658627.2.
DR AlphaFoldDB; Q93XH4; -.
DR SMR; Q93XH4; -.
DR STRING; 29760.VIT_12s0142g00360.t01; -.
DR EnsemblPlants; Vitvi12g00019_t003; Vitvi12g00019_P003; Vitvi12g00019.
DR EnsemblPlants; Vitvi12g00019_t005; Vitvi12g00019_P005; Vitvi12g00019.
DR GeneID; 100232864; -.
DR Gramene; Vitvi12g00019_t003; Vitvi12g00019_P003; Vitvi12g00019.
DR Gramene; Vitvi12g00019_t005; Vitvi12g00019_P005; Vitvi12g00019.
DR KEGG; vvi:100232864; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_0_1; -.
DR OrthoDB; 1270226at2759; -.
DR Proteomes; UP000009183; Chromosome 12.
DR ExpressionAtlas; Q93XH4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..225
FT /note="Agamous-like MADS-box protein MADS1"
FT /id="PRO_0000447289"
SQ SEQUENCE 225 AA; 26152 MW; 509B50DFF92A5503 CRC64;
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN
SVRTTIERYK KVCSDSSNTG SVSEANAQFY QQEASKLRRQ IRDIQNLNRH ILGEALSSLN
FKELKNLETR LEKGISRIRS KKNELLFAEI EYMQKREIEL QNSNLFLRAQ IAENERAQQQ
MNLMPGSQYE SVPQQPYDSQ NLLPVNLLDP NHHYSRHDQT ALQLV
