MADS7_ORYSJ
ID MADS7_ORYSJ Reviewed; 249 AA.
AC Q0J466; B7EQ75; O04063; O24229; O24234; Q6Q9I1; Q6YZE7; Q7XB96; Q9SWQ5;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JUL-2007, sequence version 2.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=MADS-box transcription factor 7;
DE AltName: Full=FDRMADS1;
DE AltName: Full=MADS-box protein 45;
DE AltName: Full=OsMADS45;
DE AltName: Full=OsMADS7;
DE AltName: Full=Protein AGAMOUS-like 6;
DE AltName: Full=RMADS216;
GN Name=MADS7; Synonyms=AGL6, M79, MADS45;
GN OrderedLocusNames=Os08g0531700, LOC_Os08g41950; ORFNames=P0702E04.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. M201;
RX PubMed=9339904;
RA Kang H.-G., Jang S., Chung J.E., Cho Y.-G., An G.;
RT "Characterization of two rice MADS box genes that control flowering time.";
RL Mol. Cells 7:559-566(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, AND
RP DEVELOPMENTAL STAGE.
RX PubMed=9065695; DOI=10.1007/s004380050364;
RA Greco R., Stagi L., Colombo L., Angenent G.C., Sari-Gorla M., Pe M.E.;
RT "MADS box genes expressed in developing inflorescences of rice and
RT sorghum.";
RL Mol. Gen. Genet. 253:615-623(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC STRAIN=cv. Zhonghua 8; TISSUE=Flower;
RA Qu L.J., Zhang Y., Liu M., Gu H., Chen Z.;
RT "Characterization and regulation of a rice MADS-box gene.";
RL Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
RA Yao Q., Peng R., Xiong A.;
RT "Isolation and characterization of rice MADS box gene homologs.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [9]
RP INTERACTION WITH MADS6.
RX PubMed=10444103; DOI=10.1104/pp.120.4.1193;
RA Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G.;
RT "Determination of the motif responsible for interaction between the rice
RT APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.";
RL Plant Physiol. 120:1193-1204(1999).
RN [10]
RP FUNCTION.
RX AGRICOLA=IND22436162; DOI=10.1023/A:1011388620872;
RA Jeon J.-S., Lee S., Nam J., Jung K.-H., Yang W.-S., Yi G.-H., Oh B.-G.,
RA An G.;
RT "Production of transgenic rice plants showing reduced heading date and
RT plant height by ectopic expression of rice MADS-box genes.";
RL Mol. Breed. 6:581-592(2000).
RN [11]
RP INTERACTION WITH MADS13, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RX PubMed=12395189; DOI=10.1007/s00438-002-0746-6;
RA Favaro R., Immink R.G., Ferioli V., Bernasconi B., Byzova M.,
RA Angenent G.C., Kater M.M., Colombo L.;
RT "Ovule-specific MADS-box proteins have conserved protein-protein
RT interactions in monocot and dicot plants.";
RL Mol. Genet. Genomics 268:152-159(2002).
RN [12]
RP INTERACTION WITH MADS18.
RX PubMed=15299121; DOI=10.1104/pp.104.045039;
RA Fornara F., Parenicova L., Falasca G., Pelucchi N., Masiero S.,
RA Ciannamea S., Lopez-Dee Z.P., Altamura M.M., Colombo L., Kater M.M.;
RT "Functional characterization of OsMADS18, a member of the AP1/SQUA
RT subfamily of MADS box genes.";
RL Plant Physiol. 135:2207-2219(2004).
CC -!- FUNCTION: Probable transcription factor. May be involved in the control
CC of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.10}.
CC -!- SUBUNIT: May interact with the K-box of MADS6. May interact with MADS13
CC and MADS18.
CC -!- INTERACTION:
CC Q0J466; Q2QW53: MADS13; NbExp=3; IntAct=EBI-627872, EBI-627947;
CC Q0J466; Q10CQ1: MADS14; NbExp=4; IntAct=EBI-627872, EBI-627890;
CC Q0J466; Q6EU39: MADS6; NbExp=5; IntAct=EBI-627872, EBI-627980;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q0J466-1, Q6Q9I1-1;
CC Sequence=Displayed;
CC Name=2;
CC IsoId=Q0J466-2, Q6Q9I1-2;
CC Sequence=VSP_017780, VSP_017781;
CC -!- TISSUE SPECIFICITY: Expressed in lodicules, stamens and carpels.
CC {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695,
CC ECO:0000269|PubMed:9339904}.
CC -!- DEVELOPMENTAL STAGE: Expressed at early stage of flower development in
CC the spikelet (rice flower) primordia and later in stamen and pistil
CC primordia. Expressed during ovule development in the inner and outer
CC integuments. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC49816.2; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; U78891; AAC49816.2; ALT_INIT; mRNA.
DR EMBL; U31994; AAB50180.1; -; mRNA.
DR EMBL; Y15008; CAA75241.1; -; mRNA.
DR EMBL; AY332477; AAQ01163.1; -; mRNA.
DR EMBL; AY551921; AAS59827.1; -; mRNA.
DR EMBL; AP005529; BAD11642.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF24249.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT06402.1; -; Genomic_DNA.
DR EMBL; AK100263; BAG94522.1; -; mRNA.
DR PIR; T04169; T04169.
DR PIR; T04307; T04307.
DR PIR; T04335; T04335.
DR RefSeq; XP_015648761.1; XM_015793275.1.
DR RefSeq; XP_015648762.1; XM_015793276.1. [Q0J466-1]
DR AlphaFoldDB; Q0J466; -.
DR SMR; Q0J466; -.
DR IntAct; Q0J466; 13.
DR STRING; 4530.OS08T0531700-01; -.
DR PRIDE; Q0J466; -.
DR EnsemblPlants; Os08t0531700-01; Os08t0531700-01; Os08g0531700. [Q0J466-1]
DR GeneID; 4346134; -.
DR Gramene; Os08t0531700-01; Os08t0531700-01; Os08g0531700. [Q0J466-1]
DR KEGG; osa:4346134; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_2_1; -.
DR InParanoid; Q0J466; -.
DR OMA; HNVAYGH; -.
DR OrthoDB; 1064537at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q0J466; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Developmental protein; Differentiation; DNA-binding;
KW Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..249
FT /note="MADS-box transcription factor 7"
FT /id="PRO_0000229896"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 90..180
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT VAR_SEQ 1
FT /note="M -> MAEKKKKKKKKKPQSLLVLTSWRSIGM (in isoform 2)"
FT /evidence="ECO:0000303|Ref.4"
FT /id="VSP_017780"
FT VAR_SEQ 111
FT /note="Q -> QRQYYKSKHRLCLVRSKVWNLVKIRDDVTEKLCMYE (in
FT isoform 2)"
FT /evidence="ECO:0000303|Ref.4"
FT /id="VSP_017781"
FT CONFLICT 5
FT /note="R -> K (in Ref. 3; CAA75241)"
FT /evidence="ECO:0000305"
FT CONFLICT 18
FT /note="Q -> R (in Ref. 4; AAQ01163)"
FT /evidence="ECO:0000305"
FT CONFLICT 93
FT /note="S -> G (in Ref. 4; AAQ01163)"
FT /evidence="ECO:0000305"
FT CONFLICT 137
FT /note="S -> Y (in Ref. 3; CAA75241)"
FT /evidence="ECO:0000305"
FT CONFLICT 163
FT /note="V -> G (in Ref. 4; AAQ01163)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 249 AA; 28714 MW; F50ACEEBC4ABDD08 CRC64;
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST
QSMTKTLEKY QKCSYAGPET AVQNRESEQL KASRNEYLKL KARVENLQRT QRNLLGEDLD
SLGIKELESL EKQLDSSLKH VRTTRTKHLV DQLTELQRKE QMVSEANRCL RRKLEESNHV
RGQQVWEQGC NLIGYERQPE VQQPLHGGNG FFHPLDAAGE PTLQIGYPAE HHEAMNSACM
NTYMPPWLP
