MADS8_ORYSJ
ID MADS8_ORYSJ Reviewed; 248 AA.
AC Q9SAR1; O03998; O04370; Q0J0J8;
DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=MADS-box transcription factor 8;
DE AltName: Full=MADS-box protein 24;
DE AltName: Full=OsMADS24;
DE AltName: Full=OsMADS8;
GN Name=MADS8; Synonyms=MADS24;
GN OrderedLocusNames=Os09g0507200, LOC_Os09g32948;
GN ORFNames=OsJ_29947 {ECO:0000312|EMBL:EEE70016.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. M201;
RX PubMed=9339904;
RA Kang H.-G., Jang S., Chung J.E., Cho Y.-G., An G.;
RT "Characterization of two rice MADS box genes that control flowering time.";
RL Mol. Cells 7:559-566(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 12-248, TISSUE SPECIFICITY, AND DEVELOPMENTAL
RP STAGE.
RX PubMed=9065695; DOI=10.1007/s004380050364;
RA Greco R., Stagi L., Colombo L., Angenent G.C., Sari-Gorla M., Pe M.E.;
RT "MADS box genes expressed in developing inflorescences of rice and
RT sorghum.";
RL Mol. Gen. Genet. 253:615-623(1997).
RN [8]
RP INTERACTION WITH MADS6.
RX PubMed=10444103; DOI=10.1104/pp.120.4.1193;
RA Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G.;
RT "Determination of the motif responsible for interaction between the rice
RT APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.";
RL Plant Physiol. 120:1193-1204(1999).
RN [9]
RP FUNCTION.
RX AGRICOLA=IND22436162; DOI=10.1023/A:1011388620872;
RA Jeon J.-S., Lee S., Nam J., Jung K.-H., Yang W.-S., Yi G.-H., Oh B.-G.,
RA An G.;
RT "Production of transgenic rice plants showing reduced heading date and
RT plant height by ectopic expression of rice MADS-box genes.";
RL Mol. Breed. 6:581-592(2000).
RN [10]
RP INTERACTION WITH MADS13, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RX PubMed=12395189; DOI=10.1007/s00438-002-0746-6;
RA Favaro R., Immink R.G., Ferioli V., Bernasconi B., Byzova M.,
RA Angenent G.C., Kater M.M., Colombo L.;
RT "Ovule-specific MADS-box proteins have conserved protein-protein
RT interactions in monocot and dicot plants.";
RL Mol. Genet. Genomics 268:152-159(2002).
RN [11]
RP INTERACTION WITH MADS16.
RX PubMed=12905025; DOI=10.1007/s00425-003-1066-8;
RA Lee S., Jeon J.-S., An K., Moon Y.-H., Lee S.-H., Chung Y.-Y., An G.;
RT "Alteration of floral organ identity in rice through ectopic expression of
RT OsMADS16.";
RL Planta 217:904-911(2003).
RN [12]
RP INTERACTION WITH MADS18.
RX PubMed=15299121; DOI=10.1104/pp.104.045039;
RA Fornara F., Parenicova L., Falasca G., Pelucchi N., Masiero S.,
RA Ciannamea S., Lopez-Dee Z.P., Altamura M.M., Colombo L., Kater M.M.;
RT "Functional characterization of OsMADS18, a member of the AP1/SQUA
RT subfamily of MADS box genes.";
RL Plant Physiol. 135:2207-2219(2004).
RN [13]
RP INTERACTION WITH FCA, AND SUBCELLULAR LOCATION.
RX PubMed=19561057; DOI=10.1093/pcp/pcp093;
RA Jang Y.H., Park H.-Y., Kim S.-K., Lee J.H., Suh M.C., Chung Y.S.,
RA Paek K.-H., Kim J.-K.;
RT "Survey of rice proteins interacting with OsFCA and OsFY proteins which are
RT homologous to the Arabidopsis flowering time proteins, FCA and FY.";
RL Plant Cell Physiol. 50:1479-1492(2009).
CC -!- FUNCTION: Probable transcription factor. May be involved in the control
CC of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
CC -!- SUBUNIT: May interact with the K-box of MADS6 and MADS16. May interact
CC with MADS13 and MADS18. Binds to FCA (PubMed:19561057).
CC {ECO:0000269|PubMed:19561057}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:19561057}.
CC -!- TISSUE SPECIFICITY: Expressed in lodicules, stamens and carpels.
CC {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695,
CC ECO:0000269|PubMed:9339904}.
CC -!- DEVELOPMENTAL STAGE: Expressed at early stage of flower development in
CC the spikelet (rice flower) primordia and later in stamen and pistil
CC primordia. Expressed during ovule development in the inner and outer
CC integuments. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695}.
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DR EMBL; U78892; AAC49817.1; -; mRNA.
DR EMBL; AC108759; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008215; BAF25527.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT08872.1; -; Genomic_DNA.
DR EMBL; CM000146; EEE70016.1; -; Genomic_DNA.
DR EMBL; AK072867; BAG93179.1; -; mRNA.
DR EMBL; U32109; AAB53193.1; -; mRNA.
DR PIR; T04170; T04170.
DR RefSeq; XP_015610824.1; XM_015755338.1.
DR AlphaFoldDB; Q9SAR1; -.
DR SMR; Q9SAR1; -.
DR IntAct; Q9SAR1; 5.
DR STRING; 4530.OS09T0507200-01; -.
DR PaxDb; Q9SAR1; -.
DR PRIDE; Q9SAR1; -.
DR EnsemblPlants; Os09t0507200-01; Os09t0507200-01; Os09g0507200.
DR GeneID; 4347517; -.
DR Gramene; Os09t0507200-01; Os09t0507200-01; Os09g0507200.
DR KEGG; osa:4347517; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_2_1; -.
DR InParanoid; Q9SAR1; -.
DR OMA; QIAATTH; -.
DR OrthoDB; 1064537at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR Genevisible; Q9SAR1; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 1: Evidence at protein level;
KW Developmental protein; Differentiation; DNA-binding; Flowering; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..248
FT /note="MADS-box transcription factor 8"
FT /id="PRO_0000229897"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 90..180
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
SQ SEQUENCE 248 AA; 28527 MW; 201E889194CEC585 CRC64;
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG
QSMTRTLERY QKFSYGGPDT AIQNKENELV QSSRNEYLKL KARVENLQRT QRNLLGEDLG
TLGIKELEQL EKQLDSSLRH IRSTRTQHML DQLTDLQRRE QMLCEANKCL RRKLEESNQL
HGQVWEHGAT LLGYERQSPH AVQQVPPHGG NGFFHSLEAA AEPTLQIGFT PEQMNNSCVT
AFMPTWLP
