MADS9_VITVI
ID MADS9_VITVI Reviewed; 212 AA.
AC Q0HA25; F6H0I0;
DT 05-JUN-2019, integrated into UniProtKB/Swiss-Prot.
DT 05-JUN-2019, sequence version 2.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Agamous-like MADS-box protein MADS9 {ECO:0000305};
DE AltName: Full=PISTILLATA-like protein {ECO:0000305};
DE Short=VvPI {ECO:0000303|PubMed:18997115, ECO:0000303|PubMed:23181568};
DE Short=VviPI {ECO:0000303|PubMed:26818751};
DE AltName: Full=Protein FLESHLESS BERRY {ECO:0000303|PubMed:23181568};
DE AltName: Full=VvMADS9 {ECO:0000303|Ref.1};
GN Name=MADS9 {ECO:0000312|EMBL:AAY79173.1};
GN Synonyms=FLB {ECO:0000303|PubMed:23181568},
GN PI {ECO:0000303|PubMed:17920788};
GN OrderedLocusNames=VIT_18s0001g01760 {ECO:0000312|EMBL:CCB45452.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION
RP PHENOTYPE.
RC STRAIN=cv. Cabernet Sauvignon;
RX AGRICOLA=IND43853819; DOI=10.1071/FP06016;
RA Sreekantan L., Torregrosa L., Fernandez L., Thomas M.R.;
RT "VvMADS9, a class B MADS-box gene involved in grapevine flowering, shows
RT different expression patterns in mutants with abnormal petal and stamen
RT structures.";
RL Funct. Plant Biol. 33:877-886(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Cabernet Sauvignon;
RX PubMed=17920788; DOI=10.1016/j.gene.2007.08.005;
RA Poupin M.J., Federici F., Medina C., Matus J.T., Timmermann T.,
RA Arce-Johnson P.;
RT "Isolation of the three grape sub-lineages of B-class MADS-box TM6,
RT PISTILLATA and APETALA3 genes which are differentially expressed during
RT flower and fruit development.";
RL Gene 404:10-24(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Ugni blanc;
RX PubMed=23181568; DOI=10.1111/tpj.12083;
RA Fernandez L., Chaib J., Martinez-Zapater J.M., Thomas M.R., Torregrosa L.;
RT "Mis-expression of a PISTILLATA-like MADS box gene prevents fruit
RT development in grapevine.";
RL Plant J. 73:918-928(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024;
RX PubMed=17721507; DOI=10.1038/nature06148;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
RN [5]
RP GENE FAMILY.
RX PubMed=18997115; DOI=10.1104/pp.108.131052;
RA Diaz-Riquelme J., Lijavetzky D., Martinez-Zapater J.M., Carmona M.J.;
RT "Genome-wide analysis of MIKCC-type MADS box genes in grapevine.";
RL Plant Physiol. 149:354-369(2009).
RN [6]
RP GENE FAMILY.
RX PubMed=26818751; DOI=10.1186/s12864-016-2398-7;
RA Grimplet J., Martinez-Zapater J.M., Carmona M.J.;
RT "Structural and functional annotation of the MADS-box transcription factor
RT family in grapevine.";
RL BMC Genomics 17:80-80(2016).
CC -!- FUNCTION: Probable transcription factor that may play role in
CC specifying stamen and petal organ identity.
CC {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1,
CC ECO:0000305|PubMed:17920788}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00251}.
CC -!- TISSUE SPECIFICITY: Expressed during flower development in stamens and
CC petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
CC -!- DISRUPTION PHENOTYPE: Abnormal petal and stamen structures.
CC {ECO:0000269|Ref.1}.
CC -!- MISCELLANEOUS: Over-expression of PI in flowers prevents fruit
CC development leading to non-fleshy berries.
CC {ECO:0000269|PubMed:23181568}.
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DR EMBL; DQ059750; AAY79173.1; -; mRNA.
DR EMBL; DQ988043; ABK59993.1; -; Genomic_DNA.
DR EMBL; JQ993315; AFR53062.1; -; Genomic_DNA.
DR EMBL; JQ993316; AFR53063.1; -; Genomic_DNA.
DR EMBL; FN595227; CCB45452.1; -; Genomic_DNA.
DR RefSeq; NP_001267875.1; NM_001280946.1.
DR AlphaFoldDB; Q0HA25; -.
DR SMR; Q0HA25; -.
DR STRING; 29760.VIT_18s0001g01760.t01; -.
DR EnsemblPlants; Vitvi18g00221_t001; Vitvi18g00221_P001; Vitvi18g00221.
DR GeneID; 100232978; -.
DR Gramene; Vitvi18g00221_t001; Vitvi18g00221_P001; Vitvi18g00221.
DR KEGG; vvi:100232978; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_4_1; -.
DR OrthoDB; 1276495at2759; -.
DR Proteomes; UP000009183; Chromosome 18.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0010095; P:specification of petal identity; IMP:UniProtKB.
DR GO; GO:0010097; P:specification of stamen identity; IMP:UniProtKB.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..212
FT /note="Agamous-like MADS-box protein MADS9"
FT /id="PRO_0000447286"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 84..170
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT CONFLICT 88
FT /note="N -> S (in Ref. 1; AAY79173, 2; ABK59993 and 3;
FT AFR53062/AFR53063)"
SQ SEQUENCE 212 AA; 24833 MW; 0E99BDC88F84F86D CRC64;
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AHVSLVIFAS SGKMHEYCSP
STTLIDILDR YHKQSGKRLW DAKHENLNNE LDRIKKENDS MQIELRHLKG EDISSLHHKE
LMAIEDALEI GLASVRNKQM EFYKMVKKNQ RILEEENKHL NYIVHHQGMP MEAGNVREVE
SGYHQRAVRD YNPQMPFAFR VQPIQPNLQE RI
