MCC17_ARATH
ID MCC17_ARATH Reviewed; 313 AA.
AC F4J4P8; Q940H9; Q9M2J4;
DT 11-JUN-2014, integrated into UniProtKB/Swiss-Prot.
DT 11-JUN-2014, sequence version 2.
DT 03-AUG-2022, entry version 64.
DE RecName: Full=MATH domain and coiled-coil domain-containing protein At3g58220;
DE AltName: Full=RTM3-like protein At3g58220;
GN OrderedLocusNames=At3g58220; ORFNames=F9D24.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=20584941; DOI=10.1104/pp.110.155754;
RA Cosson P., Sofer L., Le Q.H., Leger V., Schurdi-Levraud V., Whitham S.A.,
RA Yamamoto M.L., Gopalan S., Le Gall O., Candresse T., Carrington J.C.,
RA Revers F.;
RT "RTM3, which controls long-distance movement of potyviruses, is a member of
RT a new plant gene family encoding a meprin and TRAF homology domain-
RT containing protein.";
RL Plant Physiol. 154:222-232(2010).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=F4J4P8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=F4J4P8-2; Sequence=VSP_054865, VSP_054866;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to intron retention.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AEE79756.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB68160.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL137081; CAB68160.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE79756.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; ANM63713.1; -; Genomic_DNA.
DR EMBL; AY054615; AAK96806.1; -; mRNA.
DR EMBL; BT006532; AAP21340.1; -; mRNA.
DR PIR; T45982; T45982.
DR RefSeq; NP_001118854.1; NM_001125382.2.
DR RefSeq; NP_001325785.1; NM_001339915.1. [F4J4P8-1]
DR AlphaFoldDB; F4J4P8; -.
DR SMR; F4J4P8; -.
DR IntAct; F4J4P8; 1.
DR PaxDb; F4J4P8; -.
DR PRIDE; F4J4P8; -.
DR ProteomicsDB; 238349; -. [F4J4P8-1]
DR EnsemblPlants; AT3G58220.5; AT3G58220.5; AT3G58220. [F4J4P8-1]
DR GeneID; 824991; -.
DR Gramene; AT3G58220.5; AT3G58220.5; AT3G58220. [F4J4P8-1]
DR KEGG; ath:AT3G58220; -.
DR Araport; AT3G58220; -.
DR TAIR; locus:2085460; AT3G58220.
DR eggNOG; KOG1987; Eukaryota.
DR HOGENOM; CLU_026537_0_0_1; -.
DR InParanoid; F4J4P8; -.
DR OMA; VEGSKWG; -.
DR OrthoDB; 128089at2759; -.
DR PRO; PR:F4J4P8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; F4J4P8; baseline and differential.
DR CDD; cd00121; MATH; 1.
DR Gene3D; 2.60.210.10; -; 1.
DR InterPro; IPR002083; MATH/TRAF_dom.
DR InterPro; IPR008974; TRAF-like.
DR Pfam; PF00917; MATH; 1.
DR SMART; SM00061; MATH; 1.
DR PROSITE; PS50144; MATH; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Coiled coil; Reference proteome.
FT CHAIN 1..313
FT /note="MATH domain and coiled-coil domain-containing
FT protein At3g58220"
FT /id="PRO_0000429294"
FT DOMAIN 10..136
FT /note="MATH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00129"
FT COILED 246..297
FT /evidence="ECO:0000255"
FT VAR_SEQ 1..167
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_054865"
FT VAR_SEQ 168..177
FT /note="MDINGFQVLP -> MGFTFTLPSQ (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_054866"
SQ SEQUENCE 313 AA; 35911 MW; 9F1CFC55D1CB6169 CRC64;
MGRIGSPLGK NEFSWVIKDF SSLGVRAIYS DEFVIGGCKW RLIAYPMGNR IKKYMSLYVE
VADSKHLPSG WSINTELRME VVNHNLYKPS QQKYRKNLWF DQKTPSWGYK TMIRHSKLSG
EEGFLVSGEV TIVVKIDVYR VFGKIKRNDD GVKSNDSVNK TQQVKETMDI NGFQVLPSQV
TLVSRILKKY PDIALGFNAK NRHLRTACMN VLISLIETLC QSPQELSDED MDEADNALVY
VQDAGFKVDW LDKKLKEVKE KKVVEQTGKT RIQELEEELK EFKQKCLDRE ALLEKEKAKV
LAARASLTLD DFV
