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MCP_BOVIN
ID   MCP_BOVIN               Reviewed;         361 AA.
AC   Q6VE48; Q7YRJ3;
DT   30-MAY-2006, integrated into UniProtKB/Swiss-Prot.
DT   30-MAY-2006, sequence version 2.
DT   25-MAY-2022, entry version 99.
DE   RecName: Full=Membrane cofactor protein;
DE   AltName: CD_antigen=CD46;
DE   Flags: Precursor;
GN   Name=CD46; Synonyms=MCP;
OS   Bos taurus (Bovine).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
OX   NCBI_TaxID=9913;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), AND TISSUE SPECIFICITY.
RC   TISSUE=Brain endothelium;
RX   PubMed=12125738; DOI=10.1093/jnen/61.7.597;
RA   Shusta E.V., Zhu C., Boado R.J., Pardridge W.M.;
RT   "Subtractive expression cloning reveals high expression of CD46 at the
RT   blood-brain barrier.";
RL   J. Neuropathol. Exp. Neurol. 61:597-604(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), PROTEIN SEQUENCE OF 49-69
RP   AND 237-254, GLYCOSYLATION, TISSUE SPECIFICITY, AND INTERACTION WITH BOVINE
RP   VIRAL DIARRHEA VIRUS.
RC   TISSUE=Lymph node;
RX   PubMed=14747544; DOI=10.1128/jvi.78.4.1792-1799.2004;
RA   Maurer K., Krey T., Moennig V., Thiel H.-J., Ruemenapf T.;
RT   "CD46 is a cellular receptor for bovine viral diarrhea virus.";
RL   J. Virol. 78:1792-1799(2004).
CC   -!- FUNCTION: Acts as a cofactor for complement factor I, a serine protease
CC       which protects autologous cells against complement-mediated injury by
CC       cleaving C3b and C4b deposited on host tissue. May be involved in the
CC       fusion of the spermatozoa with the oocyte during fertilization. May act
CC       as a costimulatory factor for T-cells which induces the differentiation
CC       of CD4+ into T-regulatory 1 cells. T-regulatory 1 cells suppress immune
CC       responses by secreting interleukin-10, and therefore are thought to
CC       prevent autoimmunity (By similarity). In case of bovine viral diarrhea
CC       virus (BVDV) infection, involved in virus attachment to cells.
CC       {ECO:0000250}.
CC   -!- SUBUNIT: Interacts with C3b. Interacts with C4b. Interacts with
CC       moesin/MSN. {ECO:0000250|UniProtKB:P15529}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasmic vesicle, secretory vesicle, acrosome
CC       inner membrane {ECO:0000250}; Single-pass type I membrane protein
CC       {ECO:0000250}. Note=Inner acrosomal membrane of spermatozoa.
CC       {ECO:0000250}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=3;
CC       Name=1;
CC         IsoId=Q6VE48-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q6VE48-2; Sequence=VSP_019033;
CC       Name=3;
CC         IsoId=Q6VE48-3; Sequence=VSP_019034;
CC   -!- TISSUE SPECIFICITY: Highly expressed at the blood-brain barrier.
CC       Broadly expressed, with highest levels in thymus and spleen (at protein
CC       level). {ECO:0000269|PubMed:12125738, ECO:0000269|PubMed:14747544}.
CC   -!- DOMAIN: Sushi domains 3 and 4 are the most important for interaction
CC       with C3b and C4b. {ECO:0000250}.
CC   -!- PTM: N-glycosylated. {ECO:0000269|PubMed:14747544}.
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DR   EMBL; AY333119; AAP92712.1; -; mRNA.
DR   EMBL; AY342429; AAR04015.1; -; mRNA.
DR   RefSeq; NP_001229493.1; NM_001242564.1.
DR   RefSeq; NP_898903.2; NM_183080.2.
DR   AlphaFoldDB; Q6VE48; -.
DR   SMR; Q6VE48; -.
DR   IntAct; Q6VE48; 1.
DR   STRING; 9913.ENSBTAP00000007107; -.
DR   PaxDb; Q6VE48; -.
DR   PeptideAtlas; Q6VE48; -.
DR   PRIDE; Q6VE48; -.
DR   GeneID; 280851; -.
DR   KEGG; bta:280851; -.
DR   CTD; 4179; -.
DR   eggNOG; ENOG502QPUC; Eukaryota.
DR   InParanoid; Q6VE48; -.
DR   OrthoDB; 1239877at2759; -.
DR   Proteomes; UP000009136; Unplaced.
DR   GO; GO:0009986; C:cell surface; IEA:InterPro.
DR   GO; GO:0002079; C:inner acrosomal membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR   GO; GO:0006958; P:complement activation, classical pathway; IEA:UniProtKB-KW.
DR   GO; GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
DR   GO; GO:0045959; P:negative regulation of complement activation, classical pathway; IBA:GO_Central.
DR   GO; GO:0007338; P:single fertilization; IEA:UniProtKB-KW.
DR   GO; GO:0002456; P:T cell mediated immunity; IBA:GO_Central.
DR   CDD; cd00033; CCP; 4.
DR   InterPro; IPR017341; CD46.
DR   InterPro; IPR035976; Sushi/SCR/CCP_sf.
DR   InterPro; IPR000436; Sushi_SCR_CCP_dom.
DR   Pfam; PF00084; Sushi; 4.
DR   PIRSF; PIRSF037971; TLX_CD46; 1.
DR   SMART; SM00032; CCP; 4.
DR   SUPFAM; SSF57535; SSF57535; 4.
DR   PROSITE; PS50923; SUSHI; 4.
PE   1: Evidence at protein level;
KW   Alternative splicing; Complement pathway; Cytoplasmic vesicle;
KW   Direct protein sequencing; Disulfide bond; Fertilization; Glycoprotein;
KW   Immunity; Innate immunity; Membrane; Phosphoprotein; Reference proteome;
KW   Repeat; Signal; Sushi; Transmembrane; Transmembrane helix.
FT   SIGNAL          1..42
FT                   /evidence="ECO:0000255"
FT   CHAIN           43..361
FT                   /note="Membrane cofactor protein"
FT                   /id="PRO_0000238968"
FT   TOPO_DOM        43..311
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        312..332
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        333..361
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          43..104
FT                   /note="Sushi 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DOMAIN          105..168
FT                   /note="Sushi 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DOMAIN          169..234
FT                   /note="Sushi 3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DOMAIN          235..294
FT                   /note="Sushi 4"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   CARBOHYD        122
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        145
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        301
FT                   /note="O-linked (GalNAc...) threonine"
FT                   /evidence="ECO:0000255"
FT   DISULFID        107..149
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DISULFID        135..166
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DISULFID        171..219
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DISULFID        200..232
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DISULFID        237..279
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   DISULFID        265..292
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00302"
FT   VAR_SEQ         324..361
FT                   /note="VLIGVGLLLCLYCCFCRQRKKGIYVTGESHRQDILFSL -> LLALDYCSAC
FT                   TAVFADRGRKGKQNVALRTPLIRIKQPLQQNR (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:12125738,
FT                   ECO:0000303|PubMed:14747544"
FT                   /id="VSP_019033"
FT   VAR_SEQ         346..361
FT                   /note="IYVTGESHRQDILFSL -> KAECSATYTTYQDKATTATEQMN (in
FT                   isoform 3)"
FT                   /evidence="ECO:0000303|PubMed:14747544"
FT                   /id="VSP_019034"
FT   CONFLICT        23
FT                   /note="R -> L (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        39
FT                   /note="S -> C (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        73
FT                   /note="H -> R (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        104..109
FT                   /note="KRRCPT -> RRQCPN (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        124
FT                   /note="S -> N (in Ref. 2; AAR04015)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        185
FT                   /note="S -> N (in Ref. 2; AAR04015)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        228
FT                   /note="Q -> K (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        244
FT                   /note="H -> Y (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        272
FT                   /note="Y -> Q (in Ref. 1; AAP92712)"
FT                   /evidence="ECO:0000305"
FT   MOD_RES         Q6VE48-3:353
FT                   /note="Phosphotyrosine"
FT                   /evidence="ECO:0000305"
FT   MOD_RES         Q6VE48-3:356
FT                   /note="Phosphotyrosine"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   361 AA;  39391 MW;  D8D877437E4DE772 CRC64;
     MRASCTPLKA PLRRPERLAS SGRFAWVLLL APLLLLPTSS DACDDPPRFV SMKPQGTLKP
     SYSPGEQIVY ECHLGFQPVT PGQVLALVCQ DNNTWSSLQE GCKKRRCPTL ADPTNGQVIL
     VNGSTEFGSE VHYVCNNGYY LLGTNISYCE VSSGTGVNWS DNPPTCEKIL CQPPPEIQNG
     KYTNSHKDVF EYNEVVTYSC DPSNGPDEYS LVGESKLTCI GNGEWSSQPP QCKVVKCVYP
     AIEHGTIVSG FGPKYYYKAT VVLKCNEGFN LYGNSVVVCG ENSTWEPELP KCIKGHPPRP
     TDASPPNGAE GLGAGYIVLV IVAVLIGVGL LLCLYCCFCR QRKKGIYVTG ESHRQDILFS
     L
 
 
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