MDH_STRAW
ID MDH_STRAW Reviewed; 329 AA.
AC Q82HS2;
DT 07-JUN-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Malate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01517, ECO:0000303|PubMed:20845078};
DE EC=1.1.1.37 {ECO:0000255|HAMAP-Rule:MF_01517, ECO:0000269|PubMed:20845078};
GN Name=mdh {ECO:0000255|HAMAP-Rule:MF_01517}; OrderedLocusNames=SAV_3436;
OS Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC
OS 14893 / NCIMB 12804 / NRRL 8165 / MA-4680).
OC Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
OC Streptomyces.
OX NCBI_TaxID=227882;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL
RC 8165 / MA-4680;
RX PubMed=11572948; DOI=10.1073/pnas.211433198;
RA Omura S., Ikeda H., Ishikawa J., Hanamoto A., Takahashi C., Shinose M.,
RA Takahashi Y., Horikawa H., Nakazawa H., Osonoe T., Kikuchi H., Shiba T.,
RA Sakaki Y., Hattori M.;
RT "Genome sequence of an industrial microorganism Streptomyces avermitilis:
RT deducing the ability of producing secondary metabolites.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:12215-12220(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL
RC 8165 / MA-4680;
RX PubMed=12692562; DOI=10.1038/nbt820;
RA Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T.,
RA Sakaki Y., Hattori M., Omura S.;
RT "Complete genome sequence and comparative analysis of the industrial
RT microorganism Streptomyces avermitilis.";
RL Nat. Biotechnol. 21:526-531(2003).
RN [3]
RP FUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATION, AND BIOPHYSICOCHEMICAL
RP PROPERTIES.
RC STRAIN=ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL
RC 8165 / MA-4680;
RX PubMed=20845078; DOI=10.1007/s11033-010-0273-1;
RA Wang Z.D., Wang B.J., Ge Y.D., Pan W., Wang J., Xu L., Liu A.M., Zhu G.P.;
RT "Expression and identification of a thermostable malate dehydrogenase from
RT multicellular prokaryote Streptomyces avermitilis MA-4680.";
RL Mol. Biol. Rep. 38:1629-1636(2011).
CC -!- FUNCTION: Catalyzes the reversible oxidation of malate to oxaloacetate.
CC Exhibits remarkably higher catalytic efficiency for oxaloacetate
CC reduction than for malate oxidation in vitro. Highly specific for
CC NAD(H). Can also use NADPH for oxaloacetate reduction, but catalytic
CC efficiency is 97-fold higher with NADH. No activity detected with
CC NADP(+) and malate. {ECO:0000269|PubMed:20845078}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=(S)-malate + NAD(+) = H(+) + NADH + oxaloacetate;
CC Xref=Rhea:RHEA:21432, ChEBI:CHEBI:15378, ChEBI:CHEBI:15589,
CC ChEBI:CHEBI:16452, ChEBI:CHEBI:57540, ChEBI:CHEBI:57945; EC=1.1.1.37;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01517,
CC ECO:0000269|PubMed:20845078};
CC -!- ACTIVITY REGULATION: Strongly inhibited by Hg(2+) and Zn(2+). Activated
CC by Na(+), NH(4)(+), Ca(2+), Cu(2+) and Mg(2+).
CC {ECO:0000269|PubMed:20845078}.
CC -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC Kinetic parameters:
CC KM=75.5 uM for oxaloacetate (in the presence of NADH)
CC {ECO:0000269|PubMed:20845078};
CC KM=433.6 uM for oxaloacetate (in the presence of NADPH)
CC {ECO:0000269|PubMed:20845078};
CC KM=36.8 uM for NADH {ECO:0000269|PubMed:20845078};
CC KM=374.1 uM for NADPH {ECO:0000269|PubMed:20845078};
CC KM=386 uM for malate {ECO:0000269|PubMed:20845078};
CC KM=592 uM for NAD(+) {ECO:0000269|PubMed:20845078};
CC Note=kcat is 1181.6 sec(-1) for NADH-dependent reduction of
CC oxaloacetate. kcat is 67.4 sec(-1) for NADPH-dependent reduction of
CC oxaloacetate. kcat is 4.88 sec(-1) for NAD(+)-dependent oxidation of
CC malate. {ECO:0000269|PubMed:20845078};
CC pH dependence:
CC Optimum pH is 8.0. {ECO:0000269|PubMed:20845078};
CC Temperature dependence:
CC Optimum temperature is 42 degrees Celsius.
CC {ECO:0000269|PubMed:20845078};
CC -!- SIMILARITY: Belongs to the LDH/MDH superfamily. MDH type 2 family.
CC {ECO:0000255|HAMAP-Rule:MF_01517}.
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DR EMBL; BA000030; BAC71148.1; -; Genomic_DNA.
DR RefSeq; WP_010984867.1; NZ_JZJK01000090.1.
DR AlphaFoldDB; Q82HS2; -.
DR SMR; Q82HS2; -.
DR STRING; 227882.SAV_3436; -.
DR EnsemblBacteria; BAC71148; BAC71148; SAVERM_3436.
DR KEGG; sma:SAVERM_3436; -.
DR eggNOG; COG0039; Bacteria.
DR HOGENOM; CLU_040727_2_0_11; -.
DR OMA; TKGMERG; -.
DR OrthoDB; 870724at2; -.
DR Proteomes; UP000000428; Chromosome.
DR GO; GO:0030060; F:L-malate dehydrogenase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006108; P:malate metabolic process; IEA:InterPro.
DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniRule.
DR Gene3D; 3.90.110.10; -; 1.
DR HAMAP; MF_01517; Malate_dehydrog_2; 1.
DR InterPro; IPR001557; L-lactate/malate_DH.
DR InterPro; IPR022383; Lactate/malate_DH_C.
DR InterPro; IPR001236; Lactate/malate_DH_N.
DR InterPro; IPR015955; Lactate_DH/Glyco_Ohase_4_C.
DR InterPro; IPR001252; Malate_DH_AS.
DR InterPro; IPR010945; Malate_DH_type2.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR PANTHER; PTHR23382; PTHR23382; 1.
DR Pfam; PF02866; Ldh_1_C; 1.
DR Pfam; PF00056; Ldh_1_N; 1.
DR PIRSF; PIRSF000102; Lac_mal_DH; 1.
DR SUPFAM; SSF51735; SSF51735; 1.
DR SUPFAM; SSF56327; SSF56327; 1.
DR TIGRFAMs; TIGR01759; MalateDH-SF1; 1.
DR PROSITE; PS00068; MDH; 1.
PE 1: Evidence at protein level;
KW NAD; Oxidoreductase; Reference proteome; Tricarboxylic acid cycle.
FT CHAIN 1..329
FT /note="Malate dehydrogenase"
FT /id="PRO_0000113393"
FT ACT_SITE 188
FT /note="Proton acceptor"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 12..18
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 93
FT /ligand="substrate"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 99
FT /ligand="substrate"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 106
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 113
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 130..132
FT /ligand="NAD(+)"
FT /ligand_id="ChEBI:CHEBI:57540"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 132
FT /ligand="substrate"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
FT BINDING 163
FT /ligand="substrate"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01517"
SQ SEQUENCE 329 AA; 34689 MW; D68E4B4720651655 CRC64;
MTRTPVNVTV TGAAGQIGYA LLFRIASGQL LGADVPVKLR LLEITPALKA AEGTAMELDD
CAFPLLQGID ITDDPNVAFD GTNVGLLVGA RPRTKGMERG DLLSANGGIF KPQGKAINDN
AADDVKILVV GNPANTNALI AQAAAPDVPA ERFTAMTRLD HNRALTQLAK KTGSTVADIK
RLTIWGNHSA TQYPDIFHAS VAGKNAAEVV NDEKWLAEDF IPTVAKRGAA IIEARGASSA
ASAANAAIDH VYTWVNGTAD GDWTSMGIPS DGSYGVPEGL ISSFPVTTKD GRYEIVQGLE
INEFSRARID ASVKELEEER EAVRALGLI
