ARID5_ARATH
ID ARID5_ARATH Reviewed; 434 AA.
AC Q0WNR6; Q9C9K6;
DT 19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=AT-rich interactive domain-containing protein 5;
DE Short=ARID domain-containing protein 5;
GN Name=ARID5; OrderedLocusNames=At1g76510; ORFNames=F14G6.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia; TISSUE=Rosette leaf;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- INTERACTION:
CC Q0WNR6; Q9LDD4: ARID2; NbExp=3; IntAct=EBI-15194457, EBI-15200250;
CC Q0WNR6; F4JFG2: SDG14; NbExp=3; IntAct=EBI-15194457, EBI-15196371;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00355}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q0WNR6-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the small heat shock protein (HSP20) family.
CC {ECO:0000255|PROSITE-ProRule:PRU00285}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51952.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC015450; AAG51952.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE35851.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35852.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM57824.1; -; Genomic_DNA.
DR EMBL; AK229370; BAF01233.1; -; mRNA.
DR EMBL; AK317473; BAH20138.1; -; mRNA.
DR PIR; A96793; A96793.
DR RefSeq; NP_001320306.1; NM_001334729.1. [Q0WNR6-1]
DR RefSeq; NP_177777.3; NM_106301.4. [Q0WNR6-1]
DR RefSeq; NP_974156.1; NM_202427.3. [Q0WNR6-1]
DR AlphaFoldDB; Q0WNR6; -.
DR SMR; Q0WNR6; -.
DR BioGRID; 29203; 12.
DR IntAct; Q0WNR6; 13.
DR STRING; 3702.AT1G76510.3; -.
DR iPTMnet; Q0WNR6; -.
DR PRIDE; Q0WNR6; -.
DR EnsemblPlants; AT1G76510.1; AT1G76510.1; AT1G76510. [Q0WNR6-1]
DR EnsemblPlants; AT1G76510.2; AT1G76510.2; AT1G76510. [Q0WNR6-1]
DR EnsemblPlants; AT1G76510.4; AT1G76510.4; AT1G76510. [Q0WNR6-1]
DR GeneID; 843984; -.
DR Gramene; AT1G76510.1; AT1G76510.1; AT1G76510. [Q0WNR6-1]
DR Gramene; AT1G76510.2; AT1G76510.2; AT1G76510. [Q0WNR6-1]
DR Gramene; AT1G76510.4; AT1G76510.4; AT1G76510. [Q0WNR6-1]
DR KEGG; ath:AT1G76510; -.
DR Araport; AT1G76510; -.
DR eggNOG; KOG2744; Eukaryota.
DR HOGENOM; CLU_029075_1_0_1; -.
DR InParanoid; Q0WNR6; -.
DR PhylomeDB; Q0WNR6; -.
DR PRO; PR:Q0WNR6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0WNR6; baseline and differential.
DR Genevisible; Q0WNR6; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.150.60; -; 1.
DR Gene3D; 2.60.40.790; -; 1.
DR InterPro; IPR002068; A-crystallin/Hsp20_dom.
DR InterPro; IPR045147; ARI3A/B/C.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR008978; HSP20-like_chaperone.
DR PANTHER; PTHR15348; PTHR15348; 1.
DR Pfam; PF01388; ARID; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SUPFAM; SSF46774; SSF46774; 1.
DR SUPFAM; SSF49764; SSF49764; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS01031; SHSP; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..434
FT /note="AT-rich interactive domain-containing protein 5"
FT /id="PRO_0000413213"
FT DOMAIN 142..233
FT /note="ARID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00355"
FT DOMAIN 336..434
FT /note="sHSP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00285"
FT REGION 1..120
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 237..274
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..50
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 238..264
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 434 AA; 48040 MW; 610A33E73EE9F251 CRC64;
MMADTEMQEQ DVPSGTKGVV EEPSELEKDL NSIERPKSPV PEDTTHTLDS DVHLSDAPIA
NQIEANEEVG GQNSVDGRNG DVDQSEKKIT SDGGQEETTL GESNPLKGDP SSPHVPEESV
KKWKTWLLSD AEAREVDEAG APQDQEAFIK EVEAFNKENF LEFKAPKFYG QPLNCLKLWR
AVIKLGGYDV VTTSKLWRQV GESFHPPKTC TTVSWTFRIF YEKALLEYEK HLRQNGELNL
PGSASLPSSG IEKEASSHQA SGSGRTRRDA AARAMQGWHS QRLLGSGEVT EPIVKEKGLN
STPKQKNLKN IGVQKQKTTT GMDLVFSHES EKQSTAEVID VGPPADWVKI NVRETKDCFE
IFALVPGLLR EEVRVQSDPA GRLVIAGQPE QLDNPWGITP FKKVVNFPAR IDPLHTSAVV
SLHGRLFVRV PFEQ
