ARID6_ARATH
ID ARID6_ARATH Reviewed; 398 AA.
AC C0SUW7; Q9SYP7;
DT 19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
DT 26-MAY-2009, sequence version 1.
DT 25-MAY-2022, entry version 93.
DE RecName: Full=AT-rich interactive domain-containing protein 6;
DE Short=ARID domain-containing protein 6;
GN Name=ARID6; OrderedLocusNames=At1g20910; ORFNames=F9H16.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- INTERACTION:
CC C0SUW7; Q9LNW3: AIP1; NbExp=3; IntAct=EBI-15192335, EBI-1573499;
CC C0SUW7; Q9LDD4: ARID2; NbExp=3; IntAct=EBI-15192335, EBI-15200250;
CC C0SUW7; Q940Y3: ARID3; NbExp=4; IntAct=EBI-15192335, EBI-15193099;
CC C0SUW7; Q9LG15: At1g55950; NbExp=4; IntAct=EBI-15192335, EBI-15192337;
CC C0SUW7; Q8RWG0: At2g36720; NbExp=4; IntAct=EBI-15192335, EBI-15202826;
CC C0SUW7; Q6DBN1: At4g08455; NbExp=3; IntAct=EBI-15192335, EBI-630062;
CC C0SUW7; Q9ZT48: ATE1; NbExp=3; IntAct=EBI-15192335, EBI-25522944;
CC C0SUW7; P93830: IAA17; NbExp=3; IntAct=EBI-15192335, EBI-632243;
CC C0SUW7; Q8VZ17: SUVH6; NbExp=3; IntAct=EBI-15192335, EBI-15193239;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00355}.
CC -!- SIMILARITY: Belongs to the small heat shock protein (HSP20) family.
CC {ECO:0000255|PROSITE-ProRule:PRU00285}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD30601.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC007369; AAD30601.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE30039.1; -; Genomic_DNA.
DR EMBL; AB493470; BAH30308.1; -; mRNA.
DR PIR; G86341; G86341.
DR RefSeq; NP_173515.2; NM_101944.3.
DR AlphaFoldDB; C0SUW7; -.
DR SMR; C0SUW7; -.
DR BioGRID; 23923; 22.
DR IntAct; C0SUW7; 22.
DR STRING; 3702.AT1G20910.1; -.
DR iPTMnet; C0SUW7; -.
DR PaxDb; C0SUW7; -.
DR PRIDE; C0SUW7; -.
DR ProteomicsDB; 245176; -.
DR EnsemblPlants; AT1G20910.1; AT1G20910.1; AT1G20910.
DR GeneID; 838684; -.
DR Gramene; AT1G20910.1; AT1G20910.1; AT1G20910.
DR KEGG; ath:AT1G20910; -.
DR Araport; AT1G20910; -.
DR TAIR; locus:2037345; AT1G20910.
DR eggNOG; KOG2744; Eukaryota.
DR HOGENOM; CLU_029075_1_0_1; -.
DR InParanoid; C0SUW7; -.
DR OMA; AFYKENF; -.
DR OrthoDB; 704147at2759; -.
DR PhylomeDB; C0SUW7; -.
DR PRO; PR:C0SUW7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; C0SUW7; baseline and differential.
DR Genevisible; C0SUW7; AT.
DR GO; GO:0000118; C:histone deacetylase complex; IDA:TAIR.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0003680; F:minor groove of adenine-thymine-rich DNA binding; IPI:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0019760; P:glucosinolate metabolic process; IMP:TAIR.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.150.60; -; 1.
DR Gene3D; 2.60.40.790; -; 1.
DR InterPro; IPR002068; A-crystallin/Hsp20_dom.
DR InterPro; IPR045147; ARI3A/B/C.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR008978; HSP20-like_chaperone.
DR PANTHER; PTHR15348; PTHR15348; 1.
DR Pfam; PF01388; ARID; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SUPFAM; SSF46774; SSF46774; 1.
DR SUPFAM; SSF49764; SSF49764; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS01031; SHSP; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..398
FT /note="AT-rich interactive domain-containing protein 6"
FT /id="PRO_0000413214"
FT DOMAIN 106..197
FT /note="ARID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00355"
FT DOMAIN 305..398
FT /note="sHSP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00285"
FT REGION 25..87
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 213..236
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 64..87
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 213..228
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 398 AA; 44265 MW; 19F5D4788AA77ABA CRC64;
MVDTEMQEQD VTFGALVETK YLEEEPLEPE NDHNPSEIPQ PLLLGDGQAN NGHGMNGGAV
GVVDHSERKT RRVQMLSPKT EGENAKKRKT WLLDSEAQGT DEAGTPVEQV AFLREVEAFY
KESFLEFKPP KFYGQPLNIL KLWRAVVNLG GYEVVTTNKL WRQVGESFNP PKTCTTVSYT
FRNFYEKALL EYEKCLRNNG ELNLPGSTLI LSSSVEKEPS SHQGSGSGRA RRDSAARAMQ
GWHAQRLVGS GEVTAPAVKD KGLISTPKHK KLKSIGLQKH KQQTSMDHVV TNEADKQLAA
EVVDVGPVAD WVKINVKESK DSFEIFALVP GLLRKEVRIQ SDPAGKVVIT GQPEQLDNPW
GITPFKKIVD LSARIDPLHT SAVMSMHGRL FIRVPFEQ
