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MIB1_HUMAN
ID   MIB1_HUMAN              Reviewed;        1006 AA.
AC   Q86YT6; B0YJ38; Q2TB37; Q68D01; Q6YI51; Q8NBY0; Q8TCB5; Q8TCL7; Q9P2M3;
DT   05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2003, sequence version 1.
DT   03-AUG-2022, entry version 183.
DE   RecName: Full=E3 ubiquitin-protein ligase MIB1;
DE            EC=2.3.2.27;
DE   AltName: Full=DAPK-interacting protein 1;
DE            Short=DIP-1;
DE   AltName: Full=Mind bomb homolog 1;
DE   AltName: Full=RING-type E3 ubiquitin transferase MIB1 {ECO:0000305};
DE   AltName: Full=Zinc finger ZZ type with ankyrin repeat domain protein 2;
GN   Name=MIB1; Synonyms=DIP1, KIAA1323, ZZANK2;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RX   PubMed=12530964; DOI=10.1016/s1534-5807(02)00409-4;
RA   Itoh M., Kim C.-H., Palardy G., Oda T., Jiang Y.-J., Maust D., Yeo S.-Y.,
RA   Lorick K., Wright G.J., Ariza-McNaughton L., Weissman A.M., Lewis J.,
RA   Chandrasekharappa S.C., Chitnis A.B.;
RT   "Mind bomb is a ubiquitin ligase that is essential for efficient activation
RT   of Notch signaling by Delta.";
RL   Dev. Cell 4:67-82(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RA   Yoo K.-W., Chitnis A., Kim C.-H.;
RL   Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RG   NHLBI resequencing and genotyping service (RS&G);
RL   Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Lung;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 195-1006.
RC   TISSUE=Amygdala, and Endometrial tumor;
RX   PubMed=17974005; DOI=10.1186/1471-2164-8-399;
RA   Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
RA   Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D.,
RA   Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A.,
RA   Wiemann S., Schupp I.;
RT   "The full-ORF clone resource of the German cDNA consortium.";
RL   BMC Genomics 8:399-399(2007).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 611-1006, AND TISSUE SPECIFICITY.
RC   TISSUE=Brain;
RX   PubMed=10718198; DOI=10.1093/dnares/7.1.65;
RA   Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O.;
RT   "Prediction of the coding sequences of unidentified human genes. XVI. The
RT   complete sequences of 150 new cDNA clones from brain which code for large
RT   proteins in vitro.";
RL   DNA Res. 7:65-73(2000).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 627-1006.
RC   TISSUE=Placenta;
RX   PubMed=14702039; DOI=10.1038/ng1285;
RA   Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
RA   Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
RA   Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
RA   Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
RA   Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H.,
RA   Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M.,
RA   Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K.,
RA   Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T.,
RA   Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M.,
RA   Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S.,
RA   Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H.,
RA   Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K.,
RA   Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N.,
RA   Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
RA   Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
RA   Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
RA   Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
RA   Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y.,
RA   Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K.,
RA   Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T.,
RA   Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T.,
RA   Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y.,
RA   Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H.,
RA   Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y.,
RA   Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H.,
RA   Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O.,
RA   Isogai T., Sugano S.;
RT   "Complete sequencing and characterization of 21,243 full-length human
RT   cDNAs.";
RL   Nat. Genet. 36:40-45(2004).
RN   [8]
RP   POSSIBLE SUBCELLULAR LOCATION.
RX   PubMed=15048887; DOI=10.1002/ana.20001;
RA   Henshall D.C., Schindler C.K., So N.K., Lan J.-Q., Meller R., Simon R.P.;
RT   "Death-associated protein kinase expression in human temporal lobe
RT   epilepsy.";
RL   Ann. Neurol. 55:485-494(2004).
RN   [9]
RP   UBIQUITINATION OF TBK1.
RX   PubMed=21903422; DOI=10.1016/j.immuni.2011.06.014;
RA   Li S., Wang L., Berman M., Kong Y.Y., Dorf M.E.;
RT   "Mapping a dynamic innate immunity protein interaction network regulating
RT   type I interferon production.";
RL   Immunity 35:426-440(2011).
RN   [10]
RP   FUNCTION IN UBIQUITINATION OF CEP131 AND PCM1, FUNCTION IN CILIOGENESIS,
RP   UBIQUITINATION, INTERACTION WITH CEP131 AND PCM1, AND SUBCELLULAR LOCATION.
RX   PubMed=24121310; DOI=10.1038/emboj.2013.223;
RA   Villumsen B.H., Danielsen J.R., Povlsen L., Sylvestersen K.B., Merdes A.,
RA   Beli P., Yang Y.G., Choudhary C., Nielsen M.L., Mailand N.,
RA   Bekker-Jensen S.;
RT   "A new cellular stress response that triggers centriolar satellite
RT   reorganization and ciliogenesis.";
RL   EMBO J. 32:3029-3040(2013).
RN   [11]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-408, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Liver;
RX   PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
RA   Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L.,
RA   Ye M., Zou H.;
RT   "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver
RT   phosphoproteome.";
RL   J. Proteomics 96:253-262(2014).
RN   [12]
RP   VARIANT HIS-174.
RX   PubMed=23033978; DOI=10.1056/nejmoa1206524;
RA   de Ligt J., Willemsen M.H., van Bon B.W., Kleefstra T., Yntema H.G.,
RA   Kroes T., Vulto-van Silfhout A.T., Koolen D.A., de Vries P., Gilissen C.,
RA   del Rosario M., Hoischen A., Scheffer H., de Vries B.B., Brunner H.G.,
RA   Veltman J.A., Vissers L.E.;
RT   "Diagnostic exome sequencing in persons with severe intellectual
RT   disability.";
RL   N. Engl. J. Med. 367:1921-1929(2012).
RN   [13]
RP   VARIANT LVNC7 PHE-943.
RX   PubMed=23314057; DOI=10.1038/nm.3046;
RA   Luxan G., Casanova J.C., Martinez-Poveda B., Prados B., D'Amato G.,
RA   MacGrogan D., Gonzalez-Rajal A., Dobarro D., Torroja C., Martinez F.,
RA   Izquierdo-Garcia J.L., Fernandez-Friera L., Sabater-Molina M., Kong Y.Y.,
RA   Pizarro G., Ibanez B., Medrano C., Garcia-Pavia P., Gimeno J.R.,
RA   Monserrat L., Jimenez-Borreguero L.J., de la Pompa J.L.;
RT   "Mutations in the NOTCH pathway regulator MIB1 cause left ventricular
RT   noncompaction cardiomyopathy.";
RL   Nat. Med. 19:193-201(2013).
CC   -!- FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination of
CC       Delta receptors, which act as ligands of Notch proteins. Positively
CC       regulates the Delta-mediated Notch signaling by ubiquitinating the
CC       intracellular domain of Delta, leading to endocytosis of Delta
CC       receptors. Probably mediates ubiquitination and subsequent proteasomal
CC       degradation of DAPK1, thereby antagonizing anti-apoptotic effects of
CC       DAPK1 to promote TNF-induced apoptosis (By similarity). Involved in
CC       ubiquitination of centriolar satellite CEP131, CEP290 and PCM1 proteins
CC       and hence inhibits primary cilium formation in proliferating cells.
CC       Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably
CC       participates in kinase activation. {ECO:0000250,
CC       ECO:0000269|PubMed:24121310}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC         [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC         cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC         EC=2.3.2.27;
CC   -!- PATHWAY: Protein modification; protein ubiquitination.
CC   -!- SUBUNIT: Interacts with CEP131 and PCM1. {ECO:0000269|PubMed:24121310}.
CC   -!- INTERACTION:
CC       Q86YT6; O95166: GABARAP; NbExp=3; IntAct=EBI-2129148, EBI-712001;
CC       Q86YT6; Q9UHD2: TBK1; NbExp=2; IntAct=EBI-2129148, EBI-356402;
CC       Q86YT6; Q9QYP6: Azi2; Xeno; NbExp=2; IntAct=EBI-2129148, EBI-6115874;
CC       Q86YT6; PRO_0000449627 [P0DTD1]: rep; Xeno; NbExp=3; IntAct=EBI-2129148, EBI-25475877;
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:24121310}.
CC       Cytoplasm, cytoskeleton, microtubule organizing center, centrosome,
CC       centriolar satellite {ECO:0000269|PubMed:24121310}. Cell membrane
CC       {ECO:0000250}. Note=Localizes to the plasma membrane (By similarity).
CC       According to PubMed:15048887, it is mitochondrial, however such
CC       localization remains unclear. Displaced from centriolar satellites in
CC       response to cellular stress, such as ultraviolet light (UV) radiation
CC       or heat shock. {ECO:0000250}.
CC   -!- TISSUE SPECIFICITY: Widely expressed at low level. Expressed at higher
CC       level in spinal cord, ovary, whole brain, and all specific brain
CC       regions examined. {ECO:0000269|PubMed:10718198}.
CC   -!- PTM: Ubiquitinated; possibly via autoubiquitination (By similarity).
CC       Ubiquitinated; this modification is inhibited in response to cellular
CC       stress, such as ultraviolet light (UV) radiation or heat shock.
CC       {ECO:0000250, ECO:0000269|PubMed:21903422,
CC       ECO:0000269|PubMed:24121310}.
CC   -!- DISEASE: Left ventricular non-compaction 7 (LVNC7) [MIM:615092]: A form
CC       of left ventricular non-compaction, a cardiomyopathy due to myocardial
CC       morphogenesis arrest and characterized by a hypertrophic left
CC       ventricle, a severely thickened 2-layered myocardium, numerous
CC       prominent trabeculations, deep intertrabecular recesses, and poor
CC       systolic function. Clinical manifestations are variable. Some affected
CC       individuals experience no symptoms at all, others develop heart
CC       failure. In some cases, left ventricular non-compaction is associated
CC       with other congenital heart anomalies. LVNC7 is an autosomal dominant
CC       condition. {ECO:0000269|PubMed:23314057}. Note=The disease is caused by
CC       variants affecting the gene represented in this entry.
CC   -!- MISCELLANEOUS: In epilepsy brain tissue, levels of expression are
CC       increased in the cytoplasm and microsomal fractions (endoplasmic
CC       reticulum).
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAH22403.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC       Sequence=AAN18023.1; Type=Frameshift; Evidence={ECO:0000305};
CC       Sequence=BAC11439.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; AY149908; AAN75493.1; -; mRNA.
DR   EMBL; AY147849; AAN18023.1; ALT_FRAME; mRNA.
DR   EMBL; EF444995; ACA06016.1; -; Genomic_DNA.
DR   EMBL; BC022403; AAH22403.1; ALT_INIT; mRNA.
DR   EMBL; BC110581; AAI10582.1; -; mRNA.
DR   EMBL; BC110582; AAI10583.1; -; mRNA.
DR   EMBL; CR749635; CAH18429.1; -; mRNA.
DR   EMBL; AL713705; CAD28502.1; -; mRNA.
DR   EMBL; AB037744; BAA92561.1; -; mRNA.
DR   EMBL; AK075157; BAC11439.1; ALT_INIT; mRNA.
DR   CCDS; CCDS11871.1; -.
DR   RefSeq; NP_065825.1; NM_020774.3.
DR   PDB; 4TSE; X-ray; 2.06 A; A/B=239-409.
DR   PDB; 4XI6; X-ray; 2.04 A; A=8-402.
DR   PDB; 4XI7; X-ray; 2.05 A; A=8-402.
DR   PDB; 4XIB; X-ray; 2.15 A; A=8-402.
DR   PDBsum; 4TSE; -.
DR   PDBsum; 4XI6; -.
DR   PDBsum; 4XI7; -.
DR   PDBsum; 4XIB; -.
DR   AlphaFoldDB; Q86YT6; -.
DR   SMR; Q86YT6; -.
DR   BioGRID; 121593; 337.
DR   IntAct; Q86YT6; 58.
DR   MINT; Q86YT6; -.
DR   STRING; 9606.ENSP00000261537; -.
DR   iPTMnet; Q86YT6; -.
DR   PhosphoSitePlus; Q86YT6; -.
DR   BioMuta; MIB1; -.
DR   DMDM; 68565512; -.
DR   EPD; Q86YT6; -.
DR   jPOST; Q86YT6; -.
DR   MassIVE; Q86YT6; -.
DR   MaxQB; Q86YT6; -.
DR   PaxDb; Q86YT6; -.
DR   PeptideAtlas; Q86YT6; -.
DR   PRIDE; Q86YT6; -.
DR   ProteomicsDB; 70468; -.
DR   Antibodypedia; 7263; 345 antibodies from 37 providers.
DR   DNASU; 57534; -.
DR   Ensembl; ENST00000261537.7; ENSP00000261537.6; ENSG00000101752.12.
DR   GeneID; 57534; -.
DR   KEGG; hsa:57534; -.
DR   MANE-Select; ENST00000261537.7; ENSP00000261537.6; NM_020774.4; NP_065825.1.
DR   UCSC; uc002ktq.5; human.
DR   CTD; 57534; -.
DR   DisGeNET; 57534; -.
DR   GeneCards; MIB1; -.
DR   HGNC; HGNC:21086; MIB1.
DR   HPA; ENSG00000101752; Low tissue specificity.
DR   MalaCards; MIB1; -.
DR   MIM; 608677; gene.
DR   MIM; 615092; phenotype.
DR   neXtProt; NX_Q86YT6; -.
DR   OpenTargets; ENSG00000101752; -.
DR   Orphanet; 54260; Left ventricular noncompaction.
DR   PharmGKB; PA134862722; -.
DR   VEuPathDB; HostDB:ENSG00000101752; -.
DR   eggNOG; KOG0504; Eukaryota.
DR   eggNOG; KOG4582; Eukaryota.
DR   GeneTree; ENSGT00940000156781; -.
DR   HOGENOM; CLU_007287_1_0_1; -.
DR   InParanoid; Q86YT6; -.
DR   OMA; CCGGIGR; -.
DR   OrthoDB; 220300at2759; -.
DR   PhylomeDB; Q86YT6; -.
DR   TreeFam; TF324147; -.
DR   PathwayCommons; Q86YT6; -.
DR   Reactome; R-HSA-2122948; Activated NOTCH1 Transmits Signal to the Nucleus.
DR   Reactome; R-HSA-2644606; Constitutive Signaling by NOTCH1 PEST Domain Mutants.
DR   Reactome; R-HSA-2691232; Constitutive Signaling by NOTCH1 HD Domain Mutants.
DR   Reactome; R-HSA-2894862; Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants.
DR   Reactome; R-HSA-2979096; NOTCH2 Activation and Transmission of Signal to the Nucleus.
DR   Reactome; R-HSA-9013507; NOTCH3 Activation and Transmission of Signal to the Nucleus.
DR   SignaLink; Q86YT6; -.
DR   SIGNOR; Q86YT6; -.
DR   UniPathway; UPA00143; -.
DR   BioGRID-ORCS; 57534; 102 hits in 1132 CRISPR screens.
DR   ChiTaRS; MIB1; human.
DR   GeneWiki; MIB1_(gene); -.
DR   GenomeRNAi; 57534; -.
DR   Pharos; Q86YT6; Tbio.
DR   PRO; PR:Q86YT6; -.
DR   Proteomes; UP000005640; Chromosome 18.
DR   RNAct; Q86YT6; protein.
DR   Bgee; ENSG00000101752; Expressed in corpus epididymis and 193 other tissues.
DR   Genevisible; Q86YT6; HS.
DR   GO; GO:0005813; C:centrosome; IDA:UniProtKB.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0031410; C:cytoplasmic vesicle; IEA:Ensembl.
DR   GO; GO:0005829; C:cytosol; TAS:Reactome.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0014069; C:postsynaptic density; IEA:Ensembl.
DR   GO; GO:0004842; F:ubiquitin-protein transferase activity; IBA:GO_Central.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0001568; P:blood vessel development; IEA:Ensembl.
DR   GO; GO:0006897; P:endocytosis; IBA:GO_Central.
DR   GO; GO:0001947; P:heart looping; IEA:Ensembl.
DR   GO; GO:0001701; P:in utero embryonic development; IEA:Ensembl.
DR   GO; GO:0045665; P:negative regulation of neuron differentiation; IEA:Ensembl.
DR   GO; GO:0001841; P:neural tube formation; IEA:Ensembl.
DR   GO; GO:0030182; P:neuron differentiation; IEA:Ensembl.
DR   GO; GO:0007219; P:Notch signaling pathway; IBA:GO_Central.
DR   GO; GO:0045807; P:positive regulation of endocytosis; IEA:Ensembl.
DR   GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR   GO; GO:0001756; P:somitogenesis; IEA:Ensembl.
DR   GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IDA:CACAO.
DR   CDD; cd02339; ZZ_Mind_bomb; 1.
DR   Gene3D; 1.25.40.20; -; 4.
DR   Gene3D; 3.30.40.10; -; 3.
DR   Gene3D; 3.30.60.90; -; 1.
DR   InterPro; IPR002110; Ankyrin_rpt.
DR   InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR   InterPro; IPR042056; MIB1/2_ZZ.
DR   InterPro; IPR010606; Mib_Herc2.
DR   InterPro; IPR037252; Mib_Herc2_sf.
DR   InterPro; IPR040847; SH3_15.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   InterPro; IPR000433; Znf_ZZ.
DR   InterPro; IPR043145; Znf_ZZ_sf.
DR   Pfam; PF12796; Ank_2; 2.
DR   Pfam; PF13637; Ank_4; 1.
DR   Pfam; PF06701; MIB_HERC2; 2.
DR   Pfam; PF18346; SH3_15; 2.
DR   Pfam; PF00569; ZZ; 1.
DR   PRINTS; PR01415; ANKYRIN.
DR   SMART; SM00248; ANK; 9.
DR   SMART; SM00184; RING; 3.
DR   SMART; SM00291; ZnF_ZZ; 1.
DR   SUPFAM; SSF159034; SSF159034; 2.
DR   SUPFAM; SSF48403; SSF48403; 1.
DR   PROSITE; PS50297; ANK_REP_REGION; 1.
DR   PROSITE; PS50088; ANK_REPEAT; 6.
DR   PROSITE; PS51416; MIB_HERC2; 2.
DR   PROSITE; PS50089; ZF_RING_2; 3.
DR   PROSITE; PS01357; ZF_ZZ_1; 1.
DR   PROSITE; PS50135; ZF_ZZ_2; 1.
PE   1: Evidence at protein level;
KW   3D-structure; ANK repeat; Cardiomyopathy; Cell membrane; Coiled coil;
KW   Cytoplasm; Cytoskeleton; Disease variant; Membrane; Metal-binding;
KW   Notch signaling pathway; Phosphoprotein; Reference proteome; Repeat;
KW   Transferase; Ubl conjugation; Ubl conjugation pathway; Zinc; Zinc-finger.
FT   CHAIN           1..1006
FT                   /note="E3 ubiquitin-protein ligase MIB1"
FT                   /id="PRO_0000055943"
FT   DOMAIN          6..74
FT                   /note="MIB/HERC2 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00749"
FT   DOMAIN          143..221
FT                   /note="MIB/HERC2 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00749"
FT   REPEAT          430..460
FT                   /note="ANK 1"
FT   REPEAT          463..492
FT                   /note="ANK 2"
FT   REPEAT          496..525
FT                   /note="ANK 3"
FT   REPEAT          529..558
FT                   /note="ANK 4"
FT   REPEAT          562..591
FT                   /note="ANK 5"
FT   REPEAT          595..627
FT                   /note="ANK 6"
FT   REPEAT          631..661
FT                   /note="ANK 7"
FT   REPEAT          665..694
FT                   /note="ANK 8"
FT   REPEAT          698..729
FT                   /note="ANK 9"
FT   ZN_FING         80..132
FT                   /note="ZZ-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   ZN_FING         819..854
FT                   /note="RING-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT   ZN_FING         866..901
FT                   /note="RING-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT   ZN_FING         963..996
FT                   /note="RING-type 3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT   COILED          935..962
FT                   /evidence="ECO:0000255"
FT   BINDING         85
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         88
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         100
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         103
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         109
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         112
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         118
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   BINDING         122
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT   MOD_RES         408
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:24275569"
FT   VARIANT         174
FT                   /note="R -> H (found in a patient with severe intellectual
FT                   disability, psychomotor delay, no speech, sleep
FT                   disturbances, feeding problems, abnormal breething, deep-
FT                   set eyes and short philtrum; dbSNP:rs755375969)"
FT                   /evidence="ECO:0000269|PubMed:23033978"
FT                   /id="VAR_069385"
FT   VARIANT         943
FT                   /note="V -> F (in LVNC7; dbSNP:rs200035428)"
FT                   /evidence="ECO:0000269|PubMed:23314057"
FT                   /id="VAR_069620"
FT   CONFLICT        327
FT                   /note="E -> K (in Ref. 2; AAN18023)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        398
FT                   /note="S -> F (in Ref. 2; AAN18023)"
FT                   /evidence="ECO:0000305"
FT   STRAND          17..20
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   TURN            27..30
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          37..52
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          57..66
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          68..72
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           74..76
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   TURN            86..88
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          91..105
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           110..114
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          124..127
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           140..142
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          145..152
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          156..159
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   TURN            166..169
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          176..182
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          192..197
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          202..208
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           209..211
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          215..219
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          221..227
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           228..230
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          251..253
FT                   /evidence="ECO:0007829|PDB:4TSE"
FT   HELIX           258..264
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   TURN            265..269
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           273..276
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           277..280
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          283..288
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   TURN            290..292
FT                   /evidence="ECO:0007829|PDB:4XIB"
FT   STRAND          294..297
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          303..306
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           308..310
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          338..341
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           345..354
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           360..365
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          369..375
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          381..385
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          388..392
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   HELIX           394..396
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          397..399
FT                   /evidence="ECO:0007829|PDB:4XI6"
FT   STRAND          402..405
FT                   /evidence="ECO:0007829|PDB:4TSE"
SQ   SEQUENCE   1006 AA;  110136 MW;  5D7D0D91AF98FF18 CRC64;
     MSNSRNNRVM VEGVGARVVR GPDWKWGKQD GGEGHVGTVR SFESPEEVVV VWDNGTAANY
     RCSGAYDLRI LDSAPTGIKH DGTMCDTCRQ QPIIGIRWKC AECTNYDLCT VCYHGDKHHL
     RHRFYRITTP GSERVLLESR RKSKKITARG IFAGARVVRG VDWQWEDQDG GNGRRGKVTE
     IQDWSASSPH SAAYVLWDNG AKNLYRVGFE GMSDLKCVQD AKGGSFYRDH CPVLGEQNGN
     RNPGGLQIGD LVNIDLDLEI VQSLQHGHGG WTDGMFETLT TTGTVCGIDE DHDIVVQYPS
     GNRWTFNPAV LTKANIVRSG DAAQGAEGGT SQFQVGDLVQ VCYDLERIKL LQRGHGEWAE
     AMLPTLGKVG RVQQIYSDSD LKVEVCGTSW TYNPAAVSKV ASAGSAISNA SGERLSQLLK
     KLFETQESGD LNEELVKAAA NGDVAKVEDL LKRPDVDVNG QCAGHTAMQA ASQNGHVDIL
     KLLLKQNVDV EAEDKDGDRA VHHAAFGDEG AVIEVLHRGS ADLNARNKRR QTPLHIAVNK
     GHLQVVKTLL DFGCHPSLQD SEGDTPLHDA ISKKRDDILA VLLEAGADVT ITNNNGFNAL
     HHAALRGNPS AMRVLLSKLP RPWIVDEKKD DGYTALHLAA LNNHVEVAEL LVHQGNANLD
     IQNVNQQTAL HLAVERQHTQ IVRLLVRAGA KLDIQDKDGD TPLHEALRHH TLSQLRQLQD
     MQDVGKVDAA WEPSKNTLIM GLGTQGAEKK SAASIACFLA ANGADLSIRN KKGQSPLDLC
     PDPNLCKALA KCHKEKVSGQ VGSRSPSMIS NDSETLEECM VCSDMKRDTL FGPCGHIATC
     SLCSPRVKKC LICKEQVQSR TKIEECVVCS DKKAAVLFQP CGHMCACENC ANLMKKCVQC
     RAVVERRVPF IMCCGGKSSE DATDDISSGN IPVLQKDKDN TNVNADVQKL QQQLQDIKEQ
     TMCPVCLDRL KNMIFLCGHG TCQLCGDRMS ECPICRKAIE RRILLY
 
 
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