MPTN_METJA
ID MPTN_METJA Reviewed; 291 AA.
AC Q58037;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Tetrahydromethanopterin:alpha-L-glutamate ligase;
DE EC=6.3.2.33;
DE AltName: Full=H(4)MPT:alpha-L-glutamate ligase;
GN Name=mptN; OrderedLocusNames=MJ0620;
OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
OS 10045 / NBRC 100440) (Methanococcus jannaschii).
OC Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales;
OC Methanocaldococcaceae; Methanocaldococcus.
OX NCBI_TaxID=243232;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440;
RX PubMed=8688087; DOI=10.1126/science.273.5278.1058;
RA Bult C.J., White O., Olsen G.J., Zhou L., Fleischmann R.D., Sutton G.G.,
RA Blake J.A., FitzGerald L.M., Clayton R.A., Gocayne J.D., Kerlavage A.R.,
RA Dougherty B.A., Tomb J.-F., Adams M.D., Reich C.I., Overbeek R.,
RA Kirkness E.F., Weinstock K.G., Merrick J.M., Glodek A., Scott J.L.,
RA Geoghagen N.S.M., Weidman J.F., Fuhrmann J.L., Nguyen D., Utterback T.R.,
RA Kelley J.M., Peterson J.D., Sadow P.W., Hanna M.C., Cotton M.D.,
RA Roberts K.M., Hurst M.A., Kaine B.P., Borodovsky M., Klenk H.-P.,
RA Fraser C.M., Smith H.O., Woese C.R., Venter J.C.;
RT "Complete genome sequence of the methanogenic archaeon, Methanococcus
RT jannaschii.";
RL Science 273:1058-1073(1996).
RN [2]
RP FUNCTION, CATALYTIC ACTIVITY, AND SUBUNIT.
RC STRAIN=ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440;
RX PubMed=12909715; DOI=10.1073/pnas.1733391100;
RA Li H., Xu H., Graham D.E., White R.H.;
RT "Glutathione synthetase homologs encode alpha-L-glutamate ligases for
RT methanogenic coenzyme F420 and tetrahydrosarcinapterin biosyntheses.";
RL Proc. Natl. Acad. Sci. U.S.A. 100:9785-9790(2003).
CC -!- FUNCTION: Catalyzes the ATP or GTP-dependent addition of one L-
CC glutamate molecule to tetrahydromethanopterin, producing
CC tetrahydrosarcinapterin. {ECO:0000269|PubMed:12909715}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=5,6,7,8-tetrahydromethanopterin + ATP + L-glutamate = 5,6,7,8-
CC tetrahydrosarcinapterin + ADP + H(+) + phosphate;
CC Xref=Rhea:RHEA:30567, ChEBI:CHEBI:15378, ChEBI:CHEBI:29985,
CC ChEBI:CHEBI:30616, ChEBI:CHEBI:43474, ChEBI:CHEBI:58103,
CC ChEBI:CHEBI:59924, ChEBI:CHEBI:456216; EC=6.3.2.33;
CC Evidence={ECO:0000269|PubMed:12909715};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250};
CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250};
CC Note=Binds 2 magnesium or manganese ions per subunit. {ECO:0000250};
CC -!- PATHWAY: Cofactor biosynthesis; 5,6,7,8-tetrahydrosarcinapterin
CC biosynthesis.
CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:12909715}.
CC -!- SIMILARITY: Belongs to the RimK family. MptN subfamily. {ECO:0000305}.
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DR EMBL; L77117; AAB98615.1; -; Genomic_DNA.
DR PIR; D64377; D64377.
DR RefSeq; WP_010870125.1; NC_000909.1.
DR AlphaFoldDB; Q58037; -.
DR SMR; Q58037; -.
DR STRING; 243232.MJ_0620; -.
DR EnsemblBacteria; AAB98615; AAB98615; MJ_0620.
DR GeneID; 1451486; -.
DR KEGG; mja:MJ_0620; -.
DR eggNOG; arCOG01589; Archaea.
DR HOGENOM; CLU_054353_2_0_2; -.
DR InParanoid; Q58037; -.
DR OMA; CYMNIAS; -.
DR OrthoDB; 42812at2157; -.
DR PhylomeDB; Q58037; -.
DR BioCyc; MetaCyc:MON-15293; -.
DR BRENDA; 6.3.2.33; 3260.
DR UniPathway; UPA00069; -.
DR Proteomes; UP000000805; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0016879; F:ligase activity, forming carbon-nitrogen bonds; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.1490.20; -; 1.
DR InterPro; IPR011761; ATP-grasp.
DR InterPro; IPR013651; ATP-grasp_RimK-type.
DR InterPro; IPR013815; ATP_grasp_subdomain_1.
DR InterPro; IPR004666; RpS6_RimK/Lys_biosynth_LsyX.
DR Pfam; PF08443; RimK; 1.
DR TIGRFAMs; TIGR00768; rimK_fam; 1.
DR PROSITE; PS50975; ATP_GRASP; 1.
PE 1: Evidence at protein level;
KW ATP-binding; GTP-binding; Ligase; Magnesium; Manganese; Metal-binding;
KW Nucleotide-binding; Reference proteome.
FT CHAIN 1..291
FT /note="Tetrahydromethanopterin:alpha-L-glutamate ligase"
FT /id="PRO_0000205502"
FT DOMAIN 101..286
FT /note="ATP-grasp"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 136
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000250"
FT BINDING 175..187
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 203
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000250"
FT BINDING 247
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 247
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 259
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 259
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 259
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 259
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 261
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
FT BINDING 261
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00409"
SQ SEQUENCE 291 AA; 33277 MW; 2B6A3438290A3B0E CRC64;
MKLGIITIER DAVVNDLIKS CEKYEVDYKV ITPSNIVAGF NLDFKLKYYK SFLDELDCCF
VRNLGWDSFF RFDVLKYLNH YIPVINPPDG IDRASNKFLT SVFLELNNLP QPKTVVTESI
NEAIVWIDKF EEAVLKPIFG CGGEGIVRVK KELPISTKLK ILNEFKEKYN TFYIQEFIKP
VRNEHRDIRA FVVDDEVVAA MYRIGGENWK NNVSQGGRVE KCEITEEIEK LALKAKNALG
LFYAGVDLIE SEDGLKVLEV NSTPSWIGLS KVSEVNIADK LLEKIIQYVK S