MSI1_ORYSJ
ID MSI1_ORYSJ Reviewed; 428 AA.
AC Q10G81; A0A0P0W0N0; Q6ASS7;
DT 31-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Histone-binding protein MSI1 homolog;
DE AltName: Full=CAF-1 p48 homolog;
DE AltName: Full=Chromatin assembly factor 1 subunit MSI1 homolog;
DE Short=CAF-1 subunit MSI1 homolog;
DE AltName: Full=WD-40 repeat-containing protein MSI1 homolog;
GN Name=MSI1; OrderedLocusNames=Os03g0640100, LOC_Os03g43890;
GN ORFNames=B1394A07.14;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Core histone-binding subunit that may target chromatin
CC assembly factors, chromatin remodeling factors and histone deacetylases
CC to their histone substrates in a manner that is regulated by
CC nucleosomal DNA. Component of several complexes which regulate
CC chromatin metabolism such as the chromatin assembly factor 1 (CAF-1)
CC complex, which is required for chromatin assembly following DNA
CC replication and DNA repair (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Component of the chromatin assembly factor 1 (CAF-1) complex,
CC composed of FSM (FAS1), FAS2 and MSI1. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the WD repeat RBAP46/RBAP48/MSI1 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAT85286.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC147427; AAT85286.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF97823.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12655.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85423.1; -; Genomic_DNA.
DR EMBL; AK059114; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015632366.1; XM_015776880.1.
DR AlphaFoldDB; Q10G81; -.
DR SMR; Q10G81; -.
DR STRING; 4530.OS03T0640100-01; -.
DR PaxDb; Q10G81; -.
DR PRIDE; Q10G81; -.
DR EnsemblPlants; Os03t0640100-01; Os03t0640100-01; Os03g0640100.
DR GeneID; 4333540; -.
DR Gramene; Os03t0640100-01; Os03t0640100-01; Os03g0640100.
DR KEGG; osa:4333540; -.
DR eggNOG; KOG0264; Eukaryota.
DR HOGENOM; CLU_020445_3_1_1; -.
DR InParanoid; Q10G81; -.
DR OMA; PHEEGCL; -.
DR OrthoDB; 831322at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10G81; OS.
DR GO; GO:0005677; C:chromatin silencing complex; IEA:EnsemblPlants.
DR GO; GO:0070176; C:DRM complex; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0031507; P:heterochromatin assembly; IEA:EnsemblPlants.
DR GO; GO:0048366; P:leaf development; IEA:EnsemblPlants.
DR GO; GO:0009555; P:pollen development; IEA:EnsemblPlants.
DR GO; GO:0045787; P:positive regulation of cell cycle; IEA:EnsemblPlants.
DR GO; GO:0009909; P:regulation of flower development; IEA:EnsemblPlants.
DR GO; GO:0006349; P:regulation of gene expression by genomic imprinting; IEA:EnsemblPlants.
DR GO; GO:2000653; P:regulation of genetic imprinting; IEA:EnsemblPlants.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR GO; GO:0010214; P:seed coat development; IEA:EnsemblPlants.
DR GO; GO:0010026; P:trichome differentiation; IEA:EnsemblPlants.
DR Gene3D; 2.130.10.10; -; 1.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR022052; Histone-bd_RBBP4_N.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR Pfam; PF12265; CAF1C_H4-bd; 1.
DR Pfam; PF00400; WD40; 5.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF50978; SSF50978; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 2: Evidence at transcript level;
KW Chromatin regulator; DNA damage; DNA recombination; DNA repair; Nucleus;
KW Reference proteome; Repeat; Transcription; Transcription regulation;
KW WD repeat.
FT CHAIN 1..428
FT /note="Histone-binding protein MSI1 homolog"
FT /id="PRO_0000420140"
FT REPEAT 127..167
FT /note="WD 1"
FT REPEAT 180..220
FT /note="WD 2"
FT REPEAT 229..269
FT /note="WD 3"
FT REPEAT 275..315
FT /note="WD 4"
FT REPEAT 319..359
FT /note="WD 5"
FT REPEAT 376..416
FT /note="WD 6"
FT CONFLICT 312
FT /note="T -> A (in Ref. 5; AK059114)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 428 AA; 48360 MW; 731EC3CE5C3F0A6D CRC64;
MPKATAAEEE EFRAEVEERL INEEYKIWKK NTPFLYDLVI THALEWPSLT VQWLPDRAEP
AGKDHSVQKM VLGTHTSDNE PNYLMLAQVQ LPLDDAEADA RHYDDDHAEI GGFGAASGKV
QIVQQINHDG EVNRARYMPQ NSFIIATKTV SAEVYVFDYS KHPSKPPLDG ACNPDLRLKG
HNSEGYGLSW SIFKEGHLLS GSDDAQICLW DIKANSKNKT LDALQIFKYH DGVVEDVAWH
LRHEYLFGSV GDDHNLLIWD LRSPVSTKPV QSVAAHQGEV NCLAFNPFNE WVVATGSTDK
TVKLFDLRKI DTSLHTFDCH KEEVFQVGWS PKNETILASC CLGRRLMVWD LSRIDQEQTP
EDAEDGPPEL LFIHGGHTSK ISDFSWNPCE DWVIASVAED NILQIWQMAE NIYHDEDDVP
TDDPAKAP
