ID   MTEF4_ORYSJ             Reviewed;         508 AA.
AC   Q6AUK6;
DT   25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT   13-SEP-2004, sequence version 1.
DT   03-AUG-2022, entry version 111.
DE   RecName: Full=Transcription termination factor MTERF4, chloroplastic {ECO:0000305};
DE   AltName: Full=Mitochondrial transcription termination factor 4 {ECO:0000305};
DE   Flags: Precursor;
GN   OrderedLocusNames=Os05g0404000 {ECO:0000312|EMBL:BAF17414.1},
GN   LOC_Os05g33500 {ECO:0000305};
GN   ORFNames=OsJ_18494 {ECO:0000312|EMBL:EEE63676.1},
GN   OSJNBb0006J12.15 {ECO:0000312|EMBL:AAT85216.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA   Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Transcription termination factor required for processing and
CC       steady-state levels of plastid transcripts. Required for splicing of
CC       the chloroplastic group II intron. Required for the accumulation of 16S
CC       and 23S ribosomes. {ECO:0000250|UniProtKB:B6TGN4}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast stroma
CC       {ECO:0000250|UniProtKB:B6TGN4}.
CC   -!- SIMILARITY: Belongs to the mTERF family. {ECO:0000305}.
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DR   EMBL; AC120991; AAT85216.1; -; Genomic_DNA.
DR   EMBL; AP008211; BAF17414.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS93934.1; -; Genomic_DNA.
DR   EMBL; CM000142; EEE63676.1; -; Genomic_DNA.
DR   EMBL; AK102821; BAG95733.1; -; mRNA.
DR   RefSeq; XP_015637874.1; XM_015782388.1.
DR   AlphaFoldDB; Q6AUK6; -.
DR   SMR; Q6AUK6; -.
DR   STRING; 4530.OS05T0404000-01; -.
DR   PaxDb; Q6AUK6; -.
DR   PRIDE; Q6AUK6; -.
DR   EnsemblPlants; Os05t0404000-01; Os05t0404000-01; Os05g0404000.
DR   GeneID; 4338743; -.
DR   Gramene; Os05t0404000-01; Os05t0404000-01; Os05g0404000.
DR   KEGG; osa:4338743; -.
DR   eggNOG; KOG1267; Eukaryota.
DR   HOGENOM; CLU_024229_1_1_1; -.
DR   InParanoid; Q6AUK6; -.
DR   OMA; TIDMEEM; -.
DR   OrthoDB; 523198at2759; -.
DR   Proteomes; UP000000763; Chromosome 5.
DR   Proteomes; UP000007752; Chromosome 5.
DR   Proteomes; UP000059680; Chromosome 5.
DR   GO; GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
DR   GO; GO:0003690; F:double-stranded DNA binding; IEA:InterPro.
DR   GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR   GO; GO:0032502; P:developmental process; IBA:GO_Central.
DR   GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-KW.
DR   GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR   GO; GO:0042794; P:plastid rRNA transcription; IEA:EnsemblPlants.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   GO; GO:0008380; P:RNA splicing; IEA:EnsemblPlants.
DR   Gene3D; 1.25.70.10; -; 2.
DR   InterPro; IPR003690; MTERF.
DR   InterPro; IPR038538; MTERF_sf.
DR   PANTHER; PTHR13068; PTHR13068; 1.
DR   Pfam; PF02536; mTERF; 1.
DR   SMART; SM00733; Mterf; 9.
PE   2: Evidence at transcript level;
KW   Chloroplast; Plastid; Reference proteome; Transcription;
KW   Transcription regulation; Transcription termination; Transit peptide.
FT   TRANSIT         1..79
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           80..508
FT                   /note="Transcription termination factor MTERF4,
FT                   chloroplastic"
FT                   /id="PRO_0000441882"
FT   REGION          28..69
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          475..508
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        483..508
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   508 AA;  56686 MW;  C85FDD57D52D493E CRC64;
     MMKSLFLFSA HPKPPPLPPS PHLRKLLRLT ASASTSASSP PRAGCSRGPA HARPRPSPRP
     SPSSSLYARP SLLDMERGRA ARRADVDAFL ASLGVDPGEL AGLELPATVD VMRERVEFLH
     SLDLSNEDLA AYPLALGCSV RKNMVPVLDY LGKLGVRQDA LPDLLRRYPQ VLHASVVVDL
     APVVKYLQGM DVRPHDVPRV LERYPELLGF KLEGTMSTSI AYLVGIGVAR RQVGSVITRF
     PEVLGMRVGK IIKPFVEHLE GIGLQRLAIA RIIEKKPYVL GFGLEDKVKP NIEALLEFGV
     RKEALAFIVA QYPDILGIEL RDKLATQQSL FESSILVSSE DFGRVIERMP QAISLGRTAV
     LKHVNFLTSC GFLLSQVSKM VVACPQLLAL NMDIMKMSFE YFQNEMERDL EELVEFPAFF
     TYGLESTVRP RHEMVAKKGF TCSLAWLLNC SDAKFDERMK YDTIGIEEME VDNSFDTNTL
     SERVEDEVED EDLDEDSDYD STDDEFIE