MTR4_CAEEL
ID MTR4_CAEEL Reviewed; 1026 AA.
AC Q23223;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 142.
DE RecName: Full=mRNA transport homolog 4;
DE AltName: Full=Uncharacterized helicase W08D2.7;
DE EC=3.6.4.-;
GN Name=mtr-4; ORFNames=W08D2.7;
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bristol N2;
RX PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG The C. elegans sequencing consortium;
RT "Genome sequence of the nematode C. elegans: a platform for investigating
RT biology.";
RL Science 282:2012-2018(1998).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the helicase family. SKI2 subfamily.
CC {ECO:0000305}.
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DR EMBL; Z70271; CAA94235.1; -; Genomic_DNA.
DR PIR; T26282; T26282.
DR RefSeq; NP_501757.1; NM_069356.5.
DR AlphaFoldDB; Q23223; -.
DR SMR; Q23223; -.
DR BioGRID; 42928; 11.
DR STRING; 6239.W08D2.7; -.
DR EPD; Q23223; -.
DR PaxDb; Q23223; -.
DR PeptideAtlas; Q23223; -.
DR EnsemblMetazoa; W08D2.7.1; W08D2.7.1; WBGene00012342.
DR GeneID; 177824; -.
DR KEGG; cel:CELE_W08D2.7; -.
DR CTD; 177824; -.
DR WormBase; W08D2.7; CE06562; WBGene00012342; mtr-4.
DR eggNOG; KOG0948; Eukaryota.
DR GeneTree; ENSGT00940000156183; -.
DR HOGENOM; CLU_002902_0_1_1; -.
DR InParanoid; Q23223; -.
DR OMA; IMLKNYN; -.
DR OrthoDB; 176060at2759; -.
DR PhylomeDB; Q23223; -.
DR Reactome; R-CEL-6791226; Major pathway of rRNA processing in the nucleolus and cytosol.
DR PRO; PR:Q23223; -.
DR Proteomes; UP000001940; Chromosome IV.
DR Bgee; WBGene00012342; Expressed in embryo and 4 other tissues.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0000460; P:maturation of 5.8S rRNA; IBA:GO_Central.
DR GO; GO:0006401; P:RNA catabolic process; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR018247; EF_Hand_1_Ca_BS.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR025696; rRNA_proc-arch_dom.
DR InterPro; IPR016438; Ski2-like.
DR InterPro; IPR012961; Ski2_C.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF13234; rRNA_proc-arch; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Nucleus;
KW Reference proteome.
FT CHAIN 1..1026
FT /note="mRNA transport homolog 4"
FT /id="PRO_0000102097"
FT DOMAIN 134..290
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 360..564
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT MOTIF 238..241
FT /note="DEIH box"
FT BINDING 147..154
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ SEQUENCE 1026 AA; 116370 MW; 7AC420E41222A92E CRC64;
MADLFDEFIE PGVKNEIMDV EEAPENPMEK LDSAKKRQAR EDMTNLLANM HNDVGVGNFD
EATSKRARVE EEEEVEEARM ENIIVHTIRT DNENCTHEVA IPPNAEFAEL RENSGTEPAK
YYPFQLDAFQ KQAILCIDNN QSVLVSAHTS AGKTVVATYA IAKCLREKQR VIYTSPIKAL
SNQKYRELEE EFKDVGLMTG DVTLNPDASC LVMTTEILRS MLYRGSEIMK EVGWVVYDEI
HYMRDKERGV VWEETIILMS KNIKQAFLSA TIPNARQFAQ WVASIKQQPV NVVYTDYRPT
PLQHWIYPVG GEGMYEVVNV KGEFREDKFR DAMSGLATAG DSAGSFNKRR TGGGTQGDSN
VLKIIRSVAS NDGLNCIVFS FSRKECESYA ISLKDMDFNK DHEKGMVKSV YESAIAQLSP
EDQKLPQILN ILPLLRRGIG VHHSGLMPIL KETIEILFGE GLVKVLFATE TFSMGLNMPA
RTVVFTSARK FDGSDNRYIT SGEYIQMAGR AGRRGKDDRG TVILMVDSAM SADDAKQIIK
GATDPLNSQF RLTYNMVLNL MRVEGMAVSW IINNSFHQFQ SYAKIPEIDK KCVQVERKIA
SFNFPWENEM RTLVDLQDQL EATRQRIIQI QREPKYIVGF LHAGRLFKVK SGDRDFKWGI
LNQFKKEQNP DDRNDQIYLC DMMIAINTEG RFDPTNPATL VPGFDLPKRR WIRVPMTIDR
ITAISAVRLK VPADIDKPDG QMRLDGMMAA ATKRFGNQIP LLDPIQDMEI KTVEMKELIA
REKSLEGRLE THSMTKRDNM KDLKKQFEQK QDAVKELNAL KAERKSVQST LHLEELNNRK
RVLRRLGYLG NDDALVLKGS VACELSASDE LILTEMLLKG IFNTLDVAQT AALLSCFVFQ
DKCAAPKLAT ELQTCLSELH EQARNVAKVS NECKMEVMED KYVSSFNPGL MDVVYQWVNG
ATFSEIVKTT DVFEGSIIRT LRRLEEVLRE MINAAKALAN KELEQKFEDA RKNLKRDIVF
AASLYL