MY104_ARATH
ID MY104_ARATH Reviewed; 382 AA.
AC Q9SM27; F4IVM2; Q9SLH2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 22-FEB-2012, sequence version 3.
DT 03-AUG-2022, entry version 141.
DE RecName: Full=Transcription factor MYB104;
DE AltName: Full=Myb-related protein 104;
DE Short=AtMYB104;
GN Name=MYB104; OrderedLocusNames=At2g26950; ORFNames=T20P8.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Landsberg erecta;
RA Li S.F., Heazlewood J., Parish R.W.;
RT "Cloning of three MYB-like genes from Arabidopsis thaliana.";
RL (er) Plant Gene Register PGR99-138(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-244.
RX PubMed=18628849; DOI=10.1002/cfg.146;
RG Regia Consortium;
RA Paz-Ares J.;
RT "REGIA, an EU project on functional genomics of transcription factors from
RT Arabidopsis thaliana.";
RL Comp. Funct. Genomics 3:102-108(2002).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11597504; DOI=10.1016/s1369-5266(00)00199-0;
RA Stracke R., Werber M., Weisshaar B.;
RT "The R2R3-MYB gene family in Arabidopsis thaliana.";
RL Curr. Opin. Plant Biol. 4:447-456(2001).
RN [6]
RP GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF13101.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAF18614.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAF18614.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AAM15011.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAM15011.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; U26934; AAF13101.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC005168; AAM15011.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC005623; AAF18614.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC07910.1; -; Genomic_DNA.
DR EMBL; DR750464; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; H84666; H84666.
DR PIR; T02640; T02640.
DR RefSeq; NP_180263.5; NM_128252.6.
DR AlphaFoldDB; Q9SM27; -.
DR SMR; Q9SM27; -.
DR BioGRID; 2588; 1.
DR STRING; 3702.AT2G26950.1; -.
DR PaxDb; Q9SM27; -.
DR PRIDE; Q9SM27; -.
DR EnsemblPlants; AT2G26950.1; AT2G26950.1; AT2G26950.
DR GeneID; 817236; -.
DR Gramene; AT2G26950.1; AT2G26950.1; AT2G26950.
DR KEGG; ath:AT2G26950; -.
DR Araport; AT2G26950; -.
DR TAIR; locus:2039478; AT2G26950.
DR eggNOG; KOG0048; Eukaryota.
DR HOGENOM; CLU_034691_0_0_1; -.
DR InParanoid; Q9SM27; -.
DR OMA; MEPETTF; -.
DR OrthoDB; 1499244at2759; -.
DR PRO; PR:Q9SM27; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SM27; baseline and differential.
DR Genevisible; Q9SM27; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..382
FT /note="Transcription factor MYB104"
FT /id="PRO_0000358835"
FT DOMAIN 13..69
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 70..120
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 41..65
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 93..116
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 326..364
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 100
FT /note="F -> L (in Ref. 1; AAF13101)"
FT /evidence="ECO:0000305"
FT CONFLICT 184
FT /note="T -> M (in Ref. 1; AAF13101)"
FT /evidence="ECO:0000305"
FT CONFLICT 343
FT /note="R -> L (in Ref. 1; AAF13101)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 382 AA; 43513 MW; 85AAC37ADE7C1927 CRC64;
MIQDQANDLL AMKKTFTKSK WKPEEDRILK DYVIQYGDRT WTHVPKRTGL PHNPASCRFR
WMNHLKPSLK KGPFTDEEEK RVLQLHAVLG NKWSQMAREF PGRTDNEIKN FWNARRMRLK
GKGLPVYPDE VREQAIRTAA QYGVKVELLN AHYSQDSLMA GNVEKPQELN NLALNQCSPY
YQSTLANVQP SRNRVMEPET TFPFTGGSAM NEQNPTLLCN PYVESTQEQL PDSHLFGNVT
YSSPPMPLIH EVENLELPSF QGFDFHEEPS SFGAEQYNPM LNLEPHNTLV QSPLIGQTPT
DFPSSFYDEL LDELLESVVN GSLGEIPKTD TSSESQLFQS SLRSHTDATP DIANTTGYVG
SNERNTTNDD DWIRLLLDEG FI
