MYB78_ARATH
ID MYB78_ARATH Reviewed; 307 AA.
AC Q9FGY3; F4K666; Q9ZTC6;
DT 15-FEB-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 163.
DE RecName: Full=Transcription factor MYB78 {ECO:0000303|PubMed:9839469};
DE AltName: Full=Myb-related protein 78 {ECO:0000303|PubMed:9839469};
DE Short=AtMYB78 {ECO:0000303|PubMed:9839469};
GN Name=MYB78 {ECO:0000303|PubMed:9839469};
GN OrderedLocusNames=At5g49620 {ECO:0000312|Araport:AT5G49620};
GN ORFNames=K6M13.18 {ECO:0000312|EMBL:BAB10776.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RA Qu L., Gu H.;
RT "The MYB transcription factor family in Arabidopsis: A genome-wide cloning
RT and expression pattern analysis.";
RL Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 90-307 (ISOFORM 1), GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
RA Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
RA Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S., Tonelli C.,
RA Paz-Ares J., Weisshaar B.;
RT "Towards functional characterisation of the members of the R2R3-MYB gene
RT family from Arabidopsis thaliana.";
RL Plant J. 16:263-276(1998).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11597504; DOI=10.1016/s1369-5266(00)00199-0;
RA Stracke R., Werber M., Weisshaar B.;
RT "The R2R3-MYB gene family in Arabidopsis thaliana.";
RL Curr. Opin. Plant Biol. 4:447-456(2001).
RN [7]
RP INDUCTION BY SALT, AND GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
CC -!- INTERACTION:
CC Q9FGY3; Q8LFK2: At3g03270; NbExp=3; IntAct=EBI-25518013, EBI-25517998;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9FGY3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9FGY3-2; Sequence=VSP_058768;
CC -!- INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
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DR EMBL; AY519635; AAS10105.1; -; mRNA.
DR EMBL; AB023033; BAB10776.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95836.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95837.1; -; Genomic_DNA.
DR EMBL; BT026076; ABG48432.1; -; mRNA.
DR EMBL; AF062909; AAC83631.1; -; mRNA.
DR PIR; T51681; T51681.
DR RefSeq; NP_001190502.1; NM_001203573.1. [Q9FGY3-2]
DR RefSeq; NP_199773.1; NM_124340.3. [Q9FGY3-1]
DR AlphaFoldDB; Q9FGY3; -.
DR SMR; Q9FGY3; -.
DR IntAct; Q9FGY3; 1.
DR STRING; 3702.AT5G49620.2; -.
DR PRIDE; Q9FGY3; -.
DR ProteomicsDB; 251370; -. [Q9FGY3-1]
DR EnsemblPlants; AT5G49620.1; AT5G49620.1; AT5G49620. [Q9FGY3-1]
DR EnsemblPlants; AT5G49620.2; AT5G49620.2; AT5G49620. [Q9FGY3-2]
DR GeneID; 835024; -.
DR Gramene; AT5G49620.1; AT5G49620.1; AT5G49620. [Q9FGY3-1]
DR Gramene; AT5G49620.2; AT5G49620.2; AT5G49620. [Q9FGY3-2]
DR KEGG; ath:AT5G49620; -.
DR Araport; AT5G49620; -.
DR TAIR; locus:2157844; AT5G49620.
DR eggNOG; KOG0048; Eukaryota.
DR OMA; CHMSSEV; -.
DR OrthoDB; 953139at2759; -.
DR PhylomeDB; Q9FGY3; -.
DR PRO; PR:Q9FGY3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FGY3; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR GO; GO:1902074; P:response to salt; IEP:UniProtKB.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR044676; EOBI/EOBII-like_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR45675; PTHR45675; 1.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..307
FT /note="Transcription factor MYB78"
FT /id="PRO_0000438967"
FT DOMAIN 23..79
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 80..130
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 51..75
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 103..126
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT VAR_SEQ 101
FT /note="N -> NSNEFDHKFSSSCED (in isoform 2)"
FT /id="VSP_058768"
SQ SEQUENCE 307 AA; 35501 MW; 0E4660E4F1CCEFCD CRC64;
MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG NRWSKIAQYL PGRTDNEIKN
YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV
INNNNTNNVD NLALMSNPNG YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM
TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
VHDNGSF
