MYB86_ARATH
ID MYB86_ARATH Reviewed; 352 AA.
AC Q8LPH6; O22685; O65249; Q9SBF4;
DT 21-DEC-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 133.
DE RecName: Full=Transcription factor MYB86;
DE AltName: Full=Myb homolog 4;
DE Short=AtMyb4;
DE AltName: Full=Myb-related protein 86;
DE Short=AtMYB86;
GN Name=MYB86; Synonyms=MYB4; OrderedLocusNames=At5g26660; ORFNames=F21E10.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Columbia; TISSUE=Rosette leaf;
RA Noji M., Urao T., Shinozaki K.-Y., Shinozaki K.;
RT "Molecular cloning of two cDNAs encoding novel myb homologs from
RT Arabidopsis.";
RL (er) Plant Gene Register PGR98-111(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=15208423; DOI=10.1104/pp.104.042176;
RA Gong W., Shen Y.-P., Ma L.-G., Pan Y., Du Y.-L., Wang D.-H., Yang J.-Y.,
RA Hu L.-D., Liu X.-F., Dong C.-X., Ma L., Chen Y.-H., Yang X.-Y., Gao Y.,
RA Zhu D., Tan X., Mu J.-Y., Zhang D.-B., Liu Y.-L., Dinesh-Kumar S.P., Li Y.,
RA Wang X.-P., Gu H.-Y., Qu L.-J., Bai S.-N., Lu Y.-T., Li J.-Y., Zhao J.-D.,
RA Zuo J., Huang H., Deng X.-W., Zhu Y.-X.;
RT "Genome-wide ORFeome cloning and analysis of Arabidopsis transcription
RT factor genes.";
RL Plant Physiol. 135:773-782(2004).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 77-352, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
RA Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
RA Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S., Tonelli C.,
RA Paz-Ares J., Weisshaar B.;
RT "Towards functional characterisation of the members of the R2R3-MYB gene
RT family from Arabidopsis thaliana.";
RL Plant J. 16:263-276(1998).
RN [7]
RP GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly
CC expressed in leaves and roots. {ECO:0000269|Ref.1}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC13592.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB005889; BAA21619.1; -; mRNA.
DR EMBL; AF058914; AAC13592.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED93580.1; -; Genomic_DNA.
DR EMBL; AY519629; AAS10099.1; -; mRNA.
DR EMBL; AY099777; AAM20628.1; -; mRNA.
DR EMBL; BT008740; AAP42753.1; -; mRNA.
DR EMBL; AF062913; AAC83635.1; -; mRNA.
DR PIR; T01196; T01196.
DR PIR; T51685; T51685.
DR RefSeq; NP_850879.1; NM_180548.4.
DR AlphaFoldDB; Q8LPH6; -.
DR SMR; Q8LPH6; -.
DR BioGRID; 17998; 11.
DR IntAct; Q8LPH6; 9.
DR STRING; 3702.AT5G26660.1; -.
DR PaxDb; Q8LPH6; -.
DR PRIDE; Q8LPH6; -.
DR ProteomicsDB; 251372; -.
DR EnsemblPlants; AT5G26660.1; AT5G26660.1; AT5G26660.
DR GeneID; 832723; -.
DR Gramene; AT5G26660.1; AT5G26660.1; AT5G26660.
DR KEGG; ath:AT5G26660; -.
DR Araport; AT5G26660; -.
DR TAIR; locus:2146804; AT5G26660.
DR eggNOG; KOG0048; Eukaryota.
DR HOGENOM; CLU_028567_15_0_1; -.
DR InParanoid; Q8LPH6; -.
DR OMA; SPWWYPA; -.
DR OrthoDB; 1499244at2759; -.
DR PhylomeDB; Q8LPH6; -.
DR PRO; PR:Q8LPH6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8LPH6; baseline and differential.
DR Genevisible; Q8LPH6; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0010119; P:regulation of stomatal movement; IBA:GO_Central.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..352
FT /note="Transcription factor MYB86"
FT /id="PRO_0000197077"
FT DOMAIN 9..61
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 62..116
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 37..61
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 89..112
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT CONFLICT 246
FT /note="Y -> F (in Ref. 1; BAA21619)"
FT /evidence="ECO:0000305"
FT CONFLICT 291
FT /note="N -> S (in Ref. 6)"
FT /evidence="ECO:0000305"
FT CONFLICT 346
FT /note="M -> T (in Ref. 1; BAA21619)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 352 AA; 39790 MW; E6CF061C0176071D CRC64;
MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY
LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT DNEIKNFWNS CLKKKLRRKG
IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT
TTNQNSAFCF SSSNTTTVSD QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS
QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
